google-api-ruby-client/generated/google/apis/genomics_v1/representations.rb

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# Copyright 2015 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
require 'date'
require 'google/apis/core/base_service'
require 'google/apis/core/json_representation'
require 'google/apis/core/hashable'
require 'google/apis/errors'
module Google
module Apis
module GenomicsV1
class ListDatasetsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Dataset
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Empty
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class UndeleteDatasetRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
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class SetIamPolicyRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Policy
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Binding
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class GetIamPolicyRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class TestIamPermissionsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class TestIamPermissionsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
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class Operation
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Status
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ListOperationsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class CancelOperationRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ImportReadGroupSetsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ExportReadGroupSetRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchReadGroupSetsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchReadGroupSetsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ReadGroupSet
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ReadGroup
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Experiment
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Program
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ListCoverageBucketsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class CoverageBucket
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Range
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchReadsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchReadsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Read
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class LinearAlignment
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Position
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class CigarUnit
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchReferenceSetsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchReferenceSetsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ReferenceSet
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchReferencesRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchReferencesResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Reference
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ListBasesResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ImportVariantsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class VariantSet
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ReferenceBound
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class VariantSetMetadata
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ExportVariantSetRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchVariantSetsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchVariantSetsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchVariantsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchVariantsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Variant
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class VariantCall
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchCallSetsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchCallSetsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class CallSet
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ImportReadGroupSetsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ImportVariantsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class OperationMetadata
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class OperationEvent
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ListDatasetsResponse
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :datasets, as: 'datasets', class: Google::Apis::GenomicsV1::Dataset, decorator: Google::Apis::GenomicsV1::Dataset::Representation
property :next_page_token, as: 'nextPageToken'
end
end
class Dataset
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :id, as: 'id'
property :project_id, as: 'projectId'
property :name, as: 'name'
property :create_time, as: 'createTime'
end
end
class Empty
# @private
class Representation < Google::Apis::Core::JsonRepresentation
end
end
class UndeleteDatasetRequest
# @private
class Representation < Google::Apis::Core::JsonRepresentation
end
end
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class SetIamPolicyRequest
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :policy, as: 'policy', class: Google::Apis::GenomicsV1::Policy, decorator: Google::Apis::GenomicsV1::Policy::Representation
end
end
class Policy
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :version, as: 'version'
collection :bindings, as: 'bindings', class: Google::Apis::GenomicsV1::Binding, decorator: Google::Apis::GenomicsV1::Binding::Representation
property :etag, :base64 => true, as: 'etag'
end
end
class Binding
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :role, as: 'role'
collection :members, as: 'members'
end
end
class GetIamPolicyRequest
# @private
class Representation < Google::Apis::Core::JsonRepresentation
end
end
class TestIamPermissionsRequest
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :permissions, as: 'permissions'
end
end
class TestIamPermissionsResponse
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :permissions, as: 'permissions'
end
end
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class Operation
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :name, as: 'name'
hash :metadata, as: 'metadata'
property :done, as: 'done'
property :error, as: 'error', class: Google::Apis::GenomicsV1::Status, decorator: Google::Apis::GenomicsV1::Status::Representation
hash :response, as: 'response'
end
end
class Status
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :code, as: 'code'
property :message, as: 'message'
collection :details, as: 'details'
end
end
class ListOperationsResponse
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :operations, as: 'operations', class: Google::Apis::GenomicsV1::Operation, decorator: Google::Apis::GenomicsV1::Operation::Representation
property :next_page_token, as: 'nextPageToken'
end
end
class CancelOperationRequest
# @private
class Representation < Google::Apis::Core::JsonRepresentation
end
end
class ImportReadGroupSetsRequest
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :dataset_id, as: 'datasetId'
property :reference_set_id, as: 'referenceSetId'
collection :source_uris, as: 'sourceUris'
property :partition_strategy, as: 'partitionStrategy'
end
end
class ExportReadGroupSetRequest
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :project_id, as: 'projectId'
property :export_uri, as: 'exportUri'
collection :reference_names, as: 'referenceNames'
end
end
class SearchReadGroupSetsRequest
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :dataset_ids, as: 'datasetIds'
property :name, as: 'name'
property :page_token, as: 'pageToken'
property :page_size, as: 'pageSize'
end
end
class SearchReadGroupSetsResponse
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :read_group_sets, as: 'readGroupSets', class: Google::Apis::GenomicsV1::ReadGroupSet, decorator: Google::Apis::GenomicsV1::ReadGroupSet::Representation
property :next_page_token, as: 'nextPageToken'
end
end
class ReadGroupSet
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :id, as: 'id'
property :dataset_id, as: 'datasetId'
property :reference_set_id, as: 'referenceSetId'
property :name, as: 'name'
property :filename, as: 'filename'
collection :read_groups, as: 'readGroups', class: Google::Apis::GenomicsV1::ReadGroup, decorator: Google::Apis::GenomicsV1::ReadGroup::Representation
hash :info, as: 'info', :class => Array do
include Representable::JSON::Collection
items
end
end
end
class ReadGroup
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :id, as: 'id'
property :dataset_id, as: 'datasetId'
property :name, as: 'name'
property :description, as: 'description'
property :sample_id, as: 'sampleId'
property :experiment, as: 'experiment', class: Google::Apis::GenomicsV1::Experiment, decorator: Google::Apis::GenomicsV1::Experiment::Representation
property :predicted_insert_size, as: 'predictedInsertSize'
collection :programs, as: 'programs', class: Google::Apis::GenomicsV1::Program, decorator: Google::Apis::GenomicsV1::Program::Representation
property :reference_set_id, as: 'referenceSetId'
hash :info, as: 'info', :class => Array do
include Representable::JSON::Collection
items
end
end
end
class Experiment
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :library_id, as: 'libraryId'
property :platform_unit, as: 'platformUnit'
property :sequencing_center, as: 'sequencingCenter'
property :instrument_model, as: 'instrumentModel'
end
end
class Program
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :command_line, as: 'commandLine'
property :id, as: 'id'
property :name, as: 'name'
property :prev_program_id, as: 'prevProgramId'
property :version, as: 'version'
end
end
class ListCoverageBucketsResponse
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :bucket_width, as: 'bucketWidth'
collection :coverage_buckets, as: 'coverageBuckets', class: Google::Apis::GenomicsV1::CoverageBucket, decorator: Google::Apis::GenomicsV1::CoverageBucket::Representation
property :next_page_token, as: 'nextPageToken'
end
end
class CoverageBucket
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :range, as: 'range', class: Google::Apis::GenomicsV1::Range, decorator: Google::Apis::GenomicsV1::Range::Representation
property :mean_coverage, as: 'meanCoverage'
end
end
class Range
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :reference_name, as: 'referenceName'
property :start, as: 'start'
property :end, as: 'end'
end
end
class SearchReadsRequest
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :read_group_set_ids, as: 'readGroupSetIds'
collection :read_group_ids, as: 'readGroupIds'
property :reference_name, as: 'referenceName'
property :start, as: 'start'
property :end, as: 'end'
property :page_token, as: 'pageToken'
property :page_size, as: 'pageSize'
end
end
class SearchReadsResponse
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :alignments, as: 'alignments', class: Google::Apis::GenomicsV1::Read, decorator: Google::Apis::GenomicsV1::Read::Representation
property :next_page_token, as: 'nextPageToken'
end
end
class Read
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :id, as: 'id'
property :read_group_id, as: 'readGroupId'
property :read_group_set_id, as: 'readGroupSetId'
property :fragment_name, as: 'fragmentName'
property :proper_placement, as: 'properPlacement'
property :duplicate_fragment, as: 'duplicateFragment'
property :fragment_length, as: 'fragmentLength'
property :read_number, as: 'readNumber'
property :number_reads, as: 'numberReads'
property :failed_vendor_quality_checks, as: 'failedVendorQualityChecks'
property :alignment, as: 'alignment', class: Google::Apis::GenomicsV1::LinearAlignment, decorator: Google::Apis::GenomicsV1::LinearAlignment::Representation
property :secondary_alignment, as: 'secondaryAlignment'
property :supplementary_alignment, as: 'supplementaryAlignment'
property :aligned_sequence, as: 'alignedSequence'
collection :aligned_quality, as: 'alignedQuality'
property :next_mate_position, as: 'nextMatePosition', class: Google::Apis::GenomicsV1::Position, decorator: Google::Apis::GenomicsV1::Position::Representation
hash :info, as: 'info', :class => Array do
include Representable::JSON::Collection
items
end
end
end
class LinearAlignment
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :position, as: 'position', class: Google::Apis::GenomicsV1::Position, decorator: Google::Apis::GenomicsV1::Position::Representation
property :mapping_quality, as: 'mappingQuality'
collection :cigar, as: 'cigar', class: Google::Apis::GenomicsV1::CigarUnit, decorator: Google::Apis::GenomicsV1::CigarUnit::Representation
end
end
class Position
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :reference_name, as: 'referenceName'
property :position, as: 'position'
property :reverse_strand, as: 'reverseStrand'
end
end
class CigarUnit
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :operation, as: 'operation'
property :operation_length, as: 'operationLength'
property :reference_sequence, as: 'referenceSequence'
end
end
class SearchReferenceSetsRequest
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :md5checksums, as: 'md5checksums'
collection :accessions, as: 'accessions'
property :assembly_id, as: 'assemblyId'
property :page_token, as: 'pageToken'
property :page_size, as: 'pageSize'
end
end
class SearchReferenceSetsResponse
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :reference_sets, as: 'referenceSets', class: Google::Apis::GenomicsV1::ReferenceSet, decorator: Google::Apis::GenomicsV1::ReferenceSet::Representation
property :next_page_token, as: 'nextPageToken'
end
end
class ReferenceSet
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :id, as: 'id'
collection :reference_ids, as: 'referenceIds'
property :md5checksum, as: 'md5checksum'
property :ncbi_taxon_id, as: 'ncbiTaxonId'
property :description, as: 'description'
property :assembly_id, as: 'assemblyId'
property :source_uri, as: 'sourceUri'
collection :source_accessions, as: 'sourceAccessions'
end
end
class SearchReferencesRequest
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :md5checksums, as: 'md5checksums'
collection :accessions, as: 'accessions'
property :reference_set_id, as: 'referenceSetId'
property :page_token, as: 'pageToken'
property :page_size, as: 'pageSize'
end
end
class SearchReferencesResponse
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :references, as: 'references', class: Google::Apis::GenomicsV1::Reference, decorator: Google::Apis::GenomicsV1::Reference::Representation
property :next_page_token, as: 'nextPageToken'
end
end
class Reference
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :id, as: 'id'
property :length, as: 'length'
property :md5checksum, as: 'md5checksum'
property :name, as: 'name'
property :source_uri, as: 'sourceUri'
collection :source_accessions, as: 'sourceAccessions'
property :ncbi_taxon_id, as: 'ncbiTaxonId'
end
end
class ListBasesResponse
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :offset, as: 'offset'
property :sequence, as: 'sequence'
property :next_page_token, as: 'nextPageToken'
end
end
class ImportVariantsRequest
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :variant_set_id, as: 'variantSetId'
collection :source_uris, as: 'sourceUris'
property :format, as: 'format'
property :normalize_reference_names, as: 'normalizeReferenceNames'
end
end
class VariantSet
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :dataset_id, as: 'datasetId'
property :id, as: 'id'
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property :reference_set_id, as: 'referenceSetId'
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collection :reference_bounds, as: 'referenceBounds', class: Google::Apis::GenomicsV1::ReferenceBound, decorator: Google::Apis::GenomicsV1::ReferenceBound::Representation
collection :metadata, as: 'metadata', class: Google::Apis::GenomicsV1::VariantSetMetadata, decorator: Google::Apis::GenomicsV1::VariantSetMetadata::Representation
end
end
class ReferenceBound
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :reference_name, as: 'referenceName'
property :upper_bound, as: 'upperBound'
end
end
class VariantSetMetadata
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :key, as: 'key'
property :value, as: 'value'
property :id, as: 'id'
property :type, as: 'type'
property :number, as: 'number'
property :description, as: 'description'
hash :info, as: 'info', :class => Array do
include Representable::JSON::Collection
items
end
end
end
class ExportVariantSetRequest
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :call_set_ids, as: 'callSetIds'
property :project_id, as: 'projectId'
property :format, as: 'format'
property :bigquery_dataset, as: 'bigqueryDataset'
property :bigquery_table, as: 'bigqueryTable'
end
end
class SearchVariantSetsRequest
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :dataset_ids, as: 'datasetIds'
property :page_token, as: 'pageToken'
property :page_size, as: 'pageSize'
end
end
class SearchVariantSetsResponse
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :variant_sets, as: 'variantSets', class: Google::Apis::GenomicsV1::VariantSet, decorator: Google::Apis::GenomicsV1::VariantSet::Representation
property :next_page_token, as: 'nextPageToken'
end
end
class SearchVariantsRequest
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :variant_set_ids, as: 'variantSetIds'
property :variant_name, as: 'variantName'
collection :call_set_ids, as: 'callSetIds'
property :reference_name, as: 'referenceName'
property :start, as: 'start'
property :end, as: 'end'
property :page_token, as: 'pageToken'
property :page_size, as: 'pageSize'
property :max_calls, as: 'maxCalls'
end
end
class SearchVariantsResponse
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :variants, as: 'variants', class: Google::Apis::GenomicsV1::Variant, decorator: Google::Apis::GenomicsV1::Variant::Representation
property :next_page_token, as: 'nextPageToken'
end
end
class Variant
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :variant_set_id, as: 'variantSetId'
property :id, as: 'id'
collection :names, as: 'names'
property :created, as: 'created'
property :reference_name, as: 'referenceName'
property :start, as: 'start'
property :end, as: 'end'
property :reference_bases, as: 'referenceBases'
collection :alternate_bases, as: 'alternateBases'
property :quality, as: 'quality'
collection :filter, as: 'filter'
hash :info, as: 'info', :class => Array do
include Representable::JSON::Collection
items
end
collection :calls, as: 'calls', class: Google::Apis::GenomicsV1::VariantCall, decorator: Google::Apis::GenomicsV1::VariantCall::Representation
end
end
class VariantCall
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :call_set_id, as: 'callSetId'
property :call_set_name, as: 'callSetName'
collection :genotype, as: 'genotype'
property :phaseset, as: 'phaseset'
collection :genotype_likelihood, as: 'genotypeLikelihood'
hash :info, as: 'info', :class => Array do
include Representable::JSON::Collection
items
end
end
end
class SearchCallSetsRequest
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :variant_set_ids, as: 'variantSetIds'
property :name, as: 'name'
property :page_token, as: 'pageToken'
property :page_size, as: 'pageSize'
end
end
class SearchCallSetsResponse
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :call_sets, as: 'callSets', class: Google::Apis::GenomicsV1::CallSet, decorator: Google::Apis::GenomicsV1::CallSet::Representation
property :next_page_token, as: 'nextPageToken'
end
end
class CallSet
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :id, as: 'id'
property :name, as: 'name'
property :sample_id, as: 'sampleId'
collection :variant_set_ids, as: 'variantSetIds'
property :created, as: 'created'
hash :info, as: 'info', :class => Array do
include Representable::JSON::Collection
items
end
end
end
class ImportReadGroupSetsResponse
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :read_group_set_ids, as: 'readGroupSetIds'
end
end
class ImportVariantsResponse
# @private
class Representation < Google::Apis::Core::JsonRepresentation
collection :call_set_ids, as: 'callSetIds'
end
end
class OperationMetadata
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :project_id, as: 'projectId'
property :create_time, as: 'createTime'
hash :request, as: 'request'
collection :events, as: 'events', class: Google::Apis::GenomicsV1::OperationEvent, decorator: Google::Apis::GenomicsV1::OperationEvent::Representation
end
end
class OperationEvent
# @private
class Representation < Google::Apis::Core::JsonRepresentation
property :description, as: 'description'
end
end
end
end
end