2015-07-20 21:49:34 +00:00
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# Copyright 2015 Google Inc.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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require 'date'
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require 'google/apis/core/base_service'
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require 'google/apis/core/json_representation'
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require 'google/apis/core/hashable'
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require 'google/apis/errors'
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module Google
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module Apis
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module GenomicsV1
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2018-01-18 00:35:53 +00:00
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class Annotation
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class AnnotationSet
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class BatchCreateAnnotationsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class BatchCreateAnnotationsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class Binding
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class CallSet
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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2018-01-16 00:35:13 +00:00
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class CancelOperationRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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2017-05-26 16:44:32 +00:00
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2018-01-18 00:35:53 +00:00
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include Google::Apis::Core::JsonObjectSupport
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end
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class CigarUnit
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class ClinicalCondition
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class CodingSequence
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class ComputeEngine
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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2018-02-21 00:36:04 +00:00
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class ContainerStartedEvent
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class ContainerStoppedEvent
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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2018-01-18 00:35:53 +00:00
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class CoverageBucket
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class Dataset
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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2018-02-21 00:36:04 +00:00
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class DelayedEvent
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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2018-01-18 00:35:53 +00:00
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class Empty
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class Entry
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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2018-02-21 00:36:04 +00:00
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class Event
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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2018-01-18 00:35:53 +00:00
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class Exon
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class Experiment
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class ExportReadGroupSetRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class ExportVariantSetRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class ExternalId
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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2018-02-21 00:36:04 +00:00
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class FailedEvent
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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2018-01-18 00:35:53 +00:00
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class GetIamPolicyRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class ImportReadGroupSetsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class ImportReadGroupSetsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class ImportVariantsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class ImportVariantsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class LinearAlignment
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class ListBasesResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class ListCoverageBucketsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class ListDatasetsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class ListOperationsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class MergeVariantsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class Operation
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class OperationEvent
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class OperationMetadata
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class Policy
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class Position
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class Program
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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2018-02-21 00:36:04 +00:00
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class PullStartedEvent
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class PullStoppedEvent
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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2018-01-18 00:35:53 +00:00
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class Range
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class Read
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class ReadGroup
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class ReadGroupSet
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class Reference
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class ReferenceBound
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class ReferenceSet
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class RuntimeMetadata
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class SearchAnnotationSetsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class SearchAnnotationSetsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class SearchAnnotationsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class SearchAnnotationsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class SearchCallSetsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class SearchCallSetsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class SearchReadGroupSetsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class SearchReadGroupSetsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class SearchReadsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class SearchReadsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class SearchReferenceSetsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class SearchReferenceSetsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class SearchReferencesRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class SearchReferencesResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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include Google::Apis::Core::JsonObjectSupport
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end
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class SearchVariantSetsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
|
|
|
|
|
|
|
|
include Google::Apis::Core::JsonObjectSupport
|
|
|
|
end
|
|
|
|
|
|
|
|
class SearchVariantSetsResponse
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation; end
|
|
|
|
|
|
|
|
include Google::Apis::Core::JsonObjectSupport
|
|
|
|
end
|
|
|
|
|
|
|
|
class SearchVariantsRequest
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation; end
|
|
|
|
|
|
|
|
include Google::Apis::Core::JsonObjectSupport
|
|
|
|
end
|
|
|
|
|
|
|
|
class SearchVariantsResponse
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation; end
|
|
|
|
|
|
|
|
include Google::Apis::Core::JsonObjectSupport
|
|
|
|
end
|
|
|
|
|
|
|
|
class SetIamPolicyRequest
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation; end
|
|
|
|
|
|
|
|
include Google::Apis::Core::JsonObjectSupport
|
|
|
|
end
|
|
|
|
|
|
|
|
class Status
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation; end
|
|
|
|
|
|
|
|
include Google::Apis::Core::JsonObjectSupport
|
|
|
|
end
|
|
|
|
|
|
|
|
class TestIamPermissionsRequest
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation; end
|
|
|
|
|
|
|
|
include Google::Apis::Core::JsonObjectSupport
|
|
|
|
end
|
|
|
|
|
|
|
|
class TestIamPermissionsResponse
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation; end
|
|
|
|
|
|
|
|
include Google::Apis::Core::JsonObjectSupport
|
|
|
|
end
|
|
|
|
|
|
|
|
class Transcript
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation; end
|
|
|
|
|
|
|
|
include Google::Apis::Core::JsonObjectSupport
|
|
|
|
end
|
|
|
|
|
|
|
|
class UndeleteDatasetRequest
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation; end
|
|
|
|
|
|
|
|
include Google::Apis::Core::JsonObjectSupport
|
|
|
|
end
|
|
|
|
|
2018-02-21 00:36:04 +00:00
|
|
|
class UnexpectedExitStatusEvent
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation; end
|
|
|
|
|
|
|
|
include Google::Apis::Core::JsonObjectSupport
|
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class Variant
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation; end
|
|
|
|
|
|
|
|
include Google::Apis::Core::JsonObjectSupport
|
|
|
|
end
|
|
|
|
|
|
|
|
class VariantAnnotation
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation; end
|
|
|
|
|
|
|
|
include Google::Apis::Core::JsonObjectSupport
|
|
|
|
end
|
|
|
|
|
|
|
|
class VariantCall
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation; end
|
|
|
|
|
|
|
|
include Google::Apis::Core::JsonObjectSupport
|
|
|
|
end
|
|
|
|
|
|
|
|
class VariantSet
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation; end
|
|
|
|
|
|
|
|
include Google::Apis::Core::JsonObjectSupport
|
|
|
|
end
|
|
|
|
|
|
|
|
class VariantSetMetadata
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation; end
|
|
|
|
|
|
|
|
include Google::Apis::Core::JsonObjectSupport
|
|
|
|
end
|
|
|
|
|
2018-02-21 00:36:04 +00:00
|
|
|
class WorkerAssignedEvent
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation; end
|
|
|
|
|
|
|
|
include Google::Apis::Core::JsonObjectSupport
|
|
|
|
end
|
|
|
|
|
|
|
|
class WorkerReleasedEvent
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation; end
|
|
|
|
|
|
|
|
include Google::Apis::Core::JsonObjectSupport
|
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class Annotation
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :annotation_set_id, as: 'annotationSetId'
|
|
|
|
property :end, :numeric_string => true, as: 'end'
|
|
|
|
property :id, as: 'id'
|
|
|
|
hash :info, as: 'info', :class => Array do
|
|
|
|
include Representable::JSON::Collection
|
|
|
|
items
|
|
|
|
end
|
|
|
|
|
|
|
|
property :name, as: 'name'
|
|
|
|
property :reference_id, as: 'referenceId'
|
|
|
|
property :reference_name, as: 'referenceName'
|
|
|
|
property :reverse_strand, as: 'reverseStrand'
|
|
|
|
property :start, :numeric_string => true, as: 'start'
|
|
|
|
property :transcript, as: 'transcript', class: Google::Apis::GenomicsV1::Transcript, decorator: Google::Apis::GenomicsV1::Transcript::Representation
|
|
|
|
|
|
|
|
property :type, as: 'type'
|
|
|
|
property :variant, as: 'variant', class: Google::Apis::GenomicsV1::VariantAnnotation, decorator: Google::Apis::GenomicsV1::VariantAnnotation::Representation
|
|
|
|
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class AnnotationSet
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :dataset_id, as: 'datasetId'
|
|
|
|
property :id, as: 'id'
|
|
|
|
hash :info, as: 'info', :class => Array do
|
|
|
|
include Representable::JSON::Collection
|
|
|
|
items
|
|
|
|
end
|
|
|
|
|
|
|
|
property :name, as: 'name'
|
|
|
|
property :reference_set_id, as: 'referenceSetId'
|
|
|
|
property :source_uri, as: 'sourceUri'
|
|
|
|
property :type, as: 'type'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class BatchCreateAnnotationsRequest
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
collection :annotations, as: 'annotations', class: Google::Apis::GenomicsV1::Annotation, decorator: Google::Apis::GenomicsV1::Annotation::Representation
|
|
|
|
|
|
|
|
property :request_id, as: 'requestId'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class BatchCreateAnnotationsResponse
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
collection :entries, as: 'entries', class: Google::Apis::GenomicsV1::Entry, decorator: Google::Apis::GenomicsV1::Entry::Representation
|
|
|
|
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class Binding
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
collection :members, as: 'members'
|
|
|
|
property :role, as: 'role'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class CallSet
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :created, :numeric_string => true, as: 'created'
|
|
|
|
property :id, as: 'id'
|
|
|
|
hash :info, as: 'info', :class => Array do
|
|
|
|
include Representable::JSON::Collection
|
|
|
|
items
|
|
|
|
end
|
|
|
|
|
|
|
|
property :name, as: 'name'
|
|
|
|
property :sample_id, as: 'sampleId'
|
|
|
|
collection :variant_set_ids, as: 'variantSetIds'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class CancelOperationRequest
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class CigarUnit
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :operation, as: 'operation'
|
|
|
|
property :operation_length, :numeric_string => true, as: 'operationLength'
|
|
|
|
property :reference_sequence, as: 'referenceSequence'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class ClinicalCondition
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :concept_id, as: 'conceptId'
|
|
|
|
collection :external_ids, as: 'externalIds', class: Google::Apis::GenomicsV1::ExternalId, decorator: Google::Apis::GenomicsV1::ExternalId::Representation
|
|
|
|
|
|
|
|
collection :names, as: 'names'
|
|
|
|
property :omim_id, as: 'omimId'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class CodingSequence
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :end, :numeric_string => true, as: 'end'
|
|
|
|
property :start, :numeric_string => true, as: 'start'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class ComputeEngine
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
collection :disk_names, as: 'diskNames'
|
|
|
|
property :instance_name, as: 'instanceName'
|
|
|
|
property :machine_type, as: 'machineType'
|
|
|
|
property :zone, as: 'zone'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
2018-02-21 00:36:04 +00:00
|
|
|
class ContainerStartedEvent
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :action_id, as: 'actionId'
|
|
|
|
property :ip_address, as: 'ipAddress'
|
|
|
|
hash :port_mappings, as: 'portMappings'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class ContainerStoppedEvent
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :action_id, as: 'actionId'
|
|
|
|
property :exit_status, as: 'exitStatus'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class CoverageBucket
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :mean_coverage, as: 'meanCoverage'
|
|
|
|
property :range, as: 'range', class: Google::Apis::GenomicsV1::Range, decorator: Google::Apis::GenomicsV1::Range::Representation
|
|
|
|
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class Dataset
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :create_time, as: 'createTime'
|
|
|
|
property :id, as: 'id'
|
|
|
|
property :name, as: 'name'
|
|
|
|
property :project_id, as: 'projectId'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
2018-02-21 00:36:04 +00:00
|
|
|
class DelayedEvent
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :cause, as: 'cause'
|
|
|
|
collection :metrics, as: 'metrics'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class Empty
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class Entry
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :annotation, as: 'annotation', class: Google::Apis::GenomicsV1::Annotation, decorator: Google::Apis::GenomicsV1::Annotation::Representation
|
|
|
|
|
|
|
|
property :status, as: 'status', class: Google::Apis::GenomicsV1::Status, decorator: Google::Apis::GenomicsV1::Status::Representation
|
|
|
|
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
2018-02-21 00:36:04 +00:00
|
|
|
class Event
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :description, as: 'description'
|
|
|
|
hash :details, as: 'details'
|
|
|
|
property :timestamp, as: 'timestamp'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class Exon
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :end, :numeric_string => true, as: 'end'
|
|
|
|
property :frame, as: 'frame'
|
|
|
|
property :start, :numeric_string => true, as: 'start'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class Experiment
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :instrument_model, as: 'instrumentModel'
|
|
|
|
property :library_id, as: 'libraryId'
|
|
|
|
property :platform_unit, as: 'platformUnit'
|
|
|
|
property :sequencing_center, as: 'sequencingCenter'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class ExportReadGroupSetRequest
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :export_uri, as: 'exportUri'
|
|
|
|
property :project_id, as: 'projectId'
|
|
|
|
collection :reference_names, as: 'referenceNames'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class ExportVariantSetRequest
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :bigquery_dataset, as: 'bigqueryDataset'
|
|
|
|
property :bigquery_table, as: 'bigqueryTable'
|
|
|
|
collection :call_set_ids, as: 'callSetIds'
|
|
|
|
property :format, as: 'format'
|
|
|
|
property :project_id, as: 'projectId'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class ExternalId
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :id, as: 'id'
|
|
|
|
property :source_name, as: 'sourceName'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
2018-02-21 00:36:04 +00:00
|
|
|
class FailedEvent
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :cause, as: 'cause'
|
|
|
|
property :code, as: 'code'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class GetIamPolicyRequest
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class ImportReadGroupSetsRequest
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :dataset_id, as: 'datasetId'
|
|
|
|
property :partition_strategy, as: 'partitionStrategy'
|
|
|
|
property :reference_set_id, as: 'referenceSetId'
|
|
|
|
collection :source_uris, as: 'sourceUris'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class ImportReadGroupSetsResponse
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
collection :read_group_set_ids, as: 'readGroupSetIds'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class ImportVariantsRequest
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :format, as: 'format'
|
|
|
|
hash :info_merge_config, as: 'infoMergeConfig'
|
|
|
|
property :normalize_reference_names, as: 'normalizeReferenceNames'
|
|
|
|
collection :source_uris, as: 'sourceUris'
|
|
|
|
property :variant_set_id, as: 'variantSetId'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class ImportVariantsResponse
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
collection :call_set_ids, as: 'callSetIds'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class LinearAlignment
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
collection :cigar, as: 'cigar', class: Google::Apis::GenomicsV1::CigarUnit, decorator: Google::Apis::GenomicsV1::CigarUnit::Representation
|
|
|
|
|
|
|
|
property :mapping_quality, as: 'mappingQuality'
|
|
|
|
property :position, as: 'position', class: Google::Apis::GenomicsV1::Position, decorator: Google::Apis::GenomicsV1::Position::Representation
|
|
|
|
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class ListBasesResponse
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :next_page_token, as: 'nextPageToken'
|
|
|
|
property :offset, :numeric_string => true, as: 'offset'
|
|
|
|
property :sequence, as: 'sequence'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class ListCoverageBucketsResponse
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :bucket_width, :numeric_string => true, as: 'bucketWidth'
|
|
|
|
collection :coverage_buckets, as: 'coverageBuckets', class: Google::Apis::GenomicsV1::CoverageBucket, decorator: Google::Apis::GenomicsV1::CoverageBucket::Representation
|
|
|
|
|
|
|
|
property :next_page_token, as: 'nextPageToken'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class ListDatasetsResponse
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
collection :datasets, as: 'datasets', class: Google::Apis::GenomicsV1::Dataset, decorator: Google::Apis::GenomicsV1::Dataset::Representation
|
|
|
|
|
|
|
|
property :next_page_token, as: 'nextPageToken'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class ListOperationsResponse
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :next_page_token, as: 'nextPageToken'
|
|
|
|
collection :operations, as: 'operations', class: Google::Apis::GenomicsV1::Operation, decorator: Google::Apis::GenomicsV1::Operation::Representation
|
|
|
|
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class MergeVariantsRequest
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
hash :info_merge_config, as: 'infoMergeConfig'
|
|
|
|
property :variant_set_id, as: 'variantSetId'
|
|
|
|
collection :variants, as: 'variants', class: Google::Apis::GenomicsV1::Variant, decorator: Google::Apis::GenomicsV1::Variant::Representation
|
|
|
|
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class Operation
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :done, as: 'done'
|
|
|
|
property :error, as: 'error', class: Google::Apis::GenomicsV1::Status, decorator: Google::Apis::GenomicsV1::Status::Representation
|
|
|
|
|
|
|
|
hash :metadata, as: 'metadata'
|
|
|
|
property :name, as: 'name'
|
|
|
|
hash :response, as: 'response'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class OperationEvent
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :description, as: 'description'
|
|
|
|
property :end_time, as: 'endTime'
|
|
|
|
property :start_time, as: 'startTime'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class OperationMetadata
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :client_id, as: 'clientId'
|
|
|
|
property :create_time, as: 'createTime'
|
|
|
|
property :end_time, as: 'endTime'
|
|
|
|
collection :events, as: 'events', class: Google::Apis::GenomicsV1::OperationEvent, decorator: Google::Apis::GenomicsV1::OperationEvent::Representation
|
|
|
|
|
|
|
|
hash :labels, as: 'labels'
|
|
|
|
property :project_id, as: 'projectId'
|
|
|
|
hash :request, as: 'request'
|
|
|
|
hash :runtime_metadata, as: 'runtimeMetadata'
|
|
|
|
property :start_time, as: 'startTime'
|
|
|
|
end
|
2017-06-14 17:02:03 +00:00
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class Policy
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
collection :bindings, as: 'bindings', class: Google::Apis::GenomicsV1::Binding, decorator: Google::Apis::GenomicsV1::Binding::Representation
|
2017-06-14 17:02:03 +00:00
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
property :etag, :base64 => true, as: 'etag'
|
|
|
|
property :version, as: 'version'
|
|
|
|
end
|
2017-08-25 19:54:22 +00:00
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class Position
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :position, :numeric_string => true, as: 'position'
|
|
|
|
property :reference_name, as: 'referenceName'
|
|
|
|
property :reverse_strand, as: 'reverseStrand'
|
|
|
|
end
|
|
|
|
end
|
2017-08-25 19:54:22 +00:00
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class Program
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :command_line, as: 'commandLine'
|
|
|
|
property :id, as: 'id'
|
|
|
|
property :name, as: 'name'
|
|
|
|
property :prev_program_id, as: 'prevProgramId'
|
|
|
|
property :version, as: 'version'
|
|
|
|
end
|
2015-07-20 21:49:34 +00:00
|
|
|
end
|
|
|
|
|
2018-02-21 00:36:04 +00:00
|
|
|
class PullStartedEvent
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :image_uri, as: 'imageUri'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class PullStoppedEvent
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :image_uri, as: 'imageUri'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class Range
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :end, :numeric_string => true, as: 'end'
|
|
|
|
property :reference_name, as: 'referenceName'
|
|
|
|
property :start, :numeric_string => true, as: 'start'
|
|
|
|
end
|
|
|
|
end
|
2017-08-25 19:54:22 +00:00
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class Read
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
collection :aligned_quality, as: 'alignedQuality'
|
|
|
|
property :aligned_sequence, as: 'alignedSequence'
|
|
|
|
property :alignment, as: 'alignment', class: Google::Apis::GenomicsV1::LinearAlignment, decorator: Google::Apis::GenomicsV1::LinearAlignment::Representation
|
|
|
|
|
|
|
|
property :duplicate_fragment, as: 'duplicateFragment'
|
|
|
|
property :failed_vendor_quality_checks, as: 'failedVendorQualityChecks'
|
|
|
|
property :fragment_length, as: 'fragmentLength'
|
|
|
|
property :fragment_name, as: 'fragmentName'
|
|
|
|
property :id, as: 'id'
|
|
|
|
hash :info, as: 'info', :class => Array do
|
|
|
|
include Representable::JSON::Collection
|
|
|
|
items
|
2017-08-25 19:54:22 +00:00
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
property :next_mate_position, as: 'nextMatePosition', class: Google::Apis::GenomicsV1::Position, decorator: Google::Apis::GenomicsV1::Position::Representation
|
2015-07-20 21:49:34 +00:00
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
property :number_reads, as: 'numberReads'
|
|
|
|
property :proper_placement, as: 'properPlacement'
|
|
|
|
property :read_group_id, as: 'readGroupId'
|
|
|
|
property :read_group_set_id, as: 'readGroupSetId'
|
|
|
|
property :read_number, as: 'readNumber'
|
|
|
|
property :secondary_alignment, as: 'secondaryAlignment'
|
|
|
|
property :supplementary_alignment, as: 'supplementaryAlignment'
|
|
|
|
end
|
2017-08-25 19:54:22 +00:00
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class ReadGroup
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :dataset_id, as: 'datasetId'
|
|
|
|
property :description, as: 'description'
|
|
|
|
property :experiment, as: 'experiment', class: Google::Apis::GenomicsV1::Experiment, decorator: Google::Apis::GenomicsV1::Experiment::Representation
|
2017-03-27 22:14:47 +00:00
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
property :id, as: 'id'
|
|
|
|
hash :info, as: 'info', :class => Array do
|
|
|
|
include Representable::JSON::Collection
|
|
|
|
items
|
2017-03-27 22:14:47 +00:00
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
property :name, as: 'name'
|
|
|
|
property :predicted_insert_size, as: 'predictedInsertSize'
|
|
|
|
collection :programs, as: 'programs', class: Google::Apis::GenomicsV1::Program, decorator: Google::Apis::GenomicsV1::Program::Representation
|
2015-07-20 21:49:34 +00:00
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
property :reference_set_id, as: 'referenceSetId'
|
|
|
|
property :sample_id, as: 'sampleId'
|
|
|
|
end
|
2017-06-14 17:02:03 +00:00
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class ReadGroupSet
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :dataset_id, as: 'datasetId'
|
|
|
|
property :filename, as: 'filename'
|
|
|
|
property :id, as: 'id'
|
|
|
|
hash :info, as: 'info', :class => Array do
|
|
|
|
include Representable::JSON::Collection
|
|
|
|
items
|
|
|
|
end
|
2017-06-14 17:02:03 +00:00
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
property :name, as: 'name'
|
|
|
|
collection :read_groups, as: 'readGroups', class: Google::Apis::GenomicsV1::ReadGroup, decorator: Google::Apis::GenomicsV1::ReadGroup::Representation
|
|
|
|
|
|
|
|
property :reference_set_id, as: 'referenceSetId'
|
|
|
|
end
|
2017-06-14 17:02:03 +00:00
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class Reference
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :id, as: 'id'
|
|
|
|
property :length, :numeric_string => true, as: 'length'
|
|
|
|
property :md5checksum, as: 'md5checksum'
|
|
|
|
property :name, as: 'name'
|
|
|
|
property :ncbi_taxon_id, as: 'ncbiTaxonId'
|
|
|
|
collection :source_accessions, as: 'sourceAccessions'
|
|
|
|
property :source_uri, as: 'sourceUri'
|
|
|
|
end
|
|
|
|
end
|
2017-07-12 20:10:42 +00:00
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class ReferenceBound
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :reference_name, as: 'referenceName'
|
|
|
|
property :upper_bound, :numeric_string => true, as: 'upperBound'
|
|
|
|
end
|
2017-06-14 17:02:03 +00:00
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class ReferenceSet
|
2017-06-14 17:02:03 +00:00
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
2018-01-18 00:35:53 +00:00
|
|
|
property :assembly_id, as: 'assemblyId'
|
|
|
|
property :description, as: 'description'
|
|
|
|
property :id, as: 'id'
|
|
|
|
property :md5checksum, as: 'md5checksum'
|
|
|
|
property :ncbi_taxon_id, as: 'ncbiTaxonId'
|
|
|
|
collection :reference_ids, as: 'referenceIds'
|
|
|
|
collection :source_accessions, as: 'sourceAccessions'
|
|
|
|
property :source_uri, as: 'sourceUri'
|
2017-06-14 17:02:03 +00:00
|
|
|
end
|
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class RuntimeMetadata
|
2017-06-14 17:02:03 +00:00
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
2018-01-18 00:35:53 +00:00
|
|
|
property :compute_engine, as: 'computeEngine', class: Google::Apis::GenomicsV1::ComputeEngine, decorator: Google::Apis::GenomicsV1::ComputeEngine::Representation
|
|
|
|
|
2017-06-14 17:02:03 +00:00
|
|
|
end
|
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class SearchAnnotationSetsRequest
|
2017-06-14 17:02:03 +00:00
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
2018-01-18 00:35:53 +00:00
|
|
|
collection :dataset_ids, as: 'datasetIds'
|
|
|
|
property :name, as: 'name'
|
|
|
|
property :page_size, as: 'pageSize'
|
|
|
|
property :page_token, as: 'pageToken'
|
|
|
|
property :reference_set_id, as: 'referenceSetId'
|
|
|
|
collection :types, as: 'types'
|
2017-08-25 19:54:22 +00:00
|
|
|
end
|
2017-07-12 20:10:42 +00:00
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class SearchAnnotationSetsResponse
|
2017-08-25 19:54:22 +00:00
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
2018-01-18 00:35:53 +00:00
|
|
|
collection :annotation_sets, as: 'annotationSets', class: Google::Apis::GenomicsV1::AnnotationSet, decorator: Google::Apis::GenomicsV1::AnnotationSet::Representation
|
|
|
|
|
2017-08-25 19:54:22 +00:00
|
|
|
property :next_page_token, as: 'nextPageToken'
|
2018-01-18 00:35:53 +00:00
|
|
|
end
|
|
|
|
end
|
2017-03-10 21:11:09 +00:00
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class SearchAnnotationsRequest
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
collection :annotation_set_ids, as: 'annotationSetIds'
|
|
|
|
property :end, :numeric_string => true, as: 'end'
|
|
|
|
property :page_size, as: 'pageSize'
|
|
|
|
property :page_token, as: 'pageToken'
|
|
|
|
property :reference_id, as: 'referenceId'
|
|
|
|
property :reference_name, as: 'referenceName'
|
|
|
|
property :start, :numeric_string => true, as: 'start'
|
2017-08-25 19:54:22 +00:00
|
|
|
end
|
|
|
|
end
|
2017-06-14 17:02:03 +00:00
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class SearchAnnotationsResponse
|
2017-08-25 19:54:22 +00:00
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
2018-01-18 00:35:53 +00:00
|
|
|
collection :annotations, as: 'annotations', class: Google::Apis::GenomicsV1::Annotation, decorator: Google::Apis::GenomicsV1::Annotation::Representation
|
2017-07-12 20:10:42 +00:00
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
property :next_page_token, as: 'nextPageToken'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class SearchCallSetsRequest
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
2018-01-16 00:35:13 +00:00
|
|
|
property :name, as: 'name'
|
2018-01-18 00:35:53 +00:00
|
|
|
property :page_size, as: 'pageSize'
|
|
|
|
property :page_token, as: 'pageToken'
|
|
|
|
collection :variant_set_ids, as: 'variantSetIds'
|
2015-07-20 21:49:34 +00:00
|
|
|
end
|
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class SearchCallSetsResponse
|
2015-07-20 21:49:34 +00:00
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
2018-01-18 00:35:53 +00:00
|
|
|
collection :call_sets, as: 'callSets', class: Google::Apis::GenomicsV1::CallSet, decorator: Google::Apis::GenomicsV1::CallSet::Representation
|
|
|
|
|
|
|
|
property :next_page_token, as: 'nextPageToken'
|
2017-07-12 20:10:42 +00:00
|
|
|
end
|
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class SearchReadGroupSetsRequest
|
2017-07-12 20:10:42 +00:00
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
2018-01-18 00:35:53 +00:00
|
|
|
collection :dataset_ids, as: 'datasetIds'
|
|
|
|
property :name, as: 'name'
|
|
|
|
property :page_size, as: 'pageSize'
|
|
|
|
property :page_token, as: 'pageToken'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class SearchReadGroupSetsResponse
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :next_page_token, as: 'nextPageToken'
|
|
|
|
collection :read_group_sets, as: 'readGroupSets', class: Google::Apis::GenomicsV1::ReadGroupSet, decorator: Google::Apis::GenomicsV1::ReadGroupSet::Representation
|
2017-07-12 20:10:42 +00:00
|
|
|
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class SearchReadsRequest
|
2017-07-12 20:10:42 +00:00
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
2018-01-18 00:35:53 +00:00
|
|
|
property :end, :numeric_string => true, as: 'end'
|
|
|
|
property :page_size, as: 'pageSize'
|
|
|
|
property :page_token, as: 'pageToken'
|
|
|
|
collection :read_group_ids, as: 'readGroupIds'
|
|
|
|
collection :read_group_set_ids, as: 'readGroupSetIds'
|
|
|
|
property :reference_name, as: 'referenceName'
|
|
|
|
property :start, :numeric_string => true, as: 'start'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class SearchReadsResponse
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
collection :alignments, as: 'alignments', class: Google::Apis::GenomicsV1::Read, decorator: Google::Apis::GenomicsV1::Read::Representation
|
|
|
|
|
|
|
|
property :next_page_token, as: 'nextPageToken'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class SearchReferenceSetsRequest
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
collection :accessions, as: 'accessions'
|
|
|
|
property :assembly_id, as: 'assemblyId'
|
|
|
|
collection :md5checksums, as: 'md5checksums'
|
|
|
|
property :page_size, as: 'pageSize'
|
|
|
|
property :page_token, as: 'pageToken'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class SearchReferenceSetsResponse
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :next_page_token, as: 'nextPageToken'
|
|
|
|
collection :reference_sets, as: 'referenceSets', class: Google::Apis::GenomicsV1::ReferenceSet, decorator: Google::Apis::GenomicsV1::ReferenceSet::Representation
|
|
|
|
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class SearchReferencesRequest
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
collection :accessions, as: 'accessions'
|
|
|
|
collection :md5checksums, as: 'md5checksums'
|
|
|
|
property :page_size, as: 'pageSize'
|
|
|
|
property :page_token, as: 'pageToken'
|
|
|
|
property :reference_set_id, as: 'referenceSetId'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class SearchReferencesResponse
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :next_page_token, as: 'nextPageToken'
|
|
|
|
collection :references, as: 'references', class: Google::Apis::GenomicsV1::Reference, decorator: Google::Apis::GenomicsV1::Reference::Representation
|
|
|
|
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class SearchVariantSetsRequest
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
collection :dataset_ids, as: 'datasetIds'
|
|
|
|
property :page_size, as: 'pageSize'
|
|
|
|
property :page_token, as: 'pageToken'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class SearchVariantSetsResponse
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :next_page_token, as: 'nextPageToken'
|
|
|
|
collection :variant_sets, as: 'variantSets', class: Google::Apis::GenomicsV1::VariantSet, decorator: Google::Apis::GenomicsV1::VariantSet::Representation
|
|
|
|
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class SearchVariantsRequest
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
collection :call_set_ids, as: 'callSetIds'
|
|
|
|
property :end, :numeric_string => true, as: 'end'
|
|
|
|
property :max_calls, as: 'maxCalls'
|
|
|
|
property :page_size, as: 'pageSize'
|
|
|
|
property :page_token, as: 'pageToken'
|
|
|
|
property :reference_name, as: 'referenceName'
|
|
|
|
property :start, :numeric_string => true, as: 'start'
|
|
|
|
property :variant_name, as: 'variantName'
|
|
|
|
collection :variant_set_ids, as: 'variantSetIds'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class SearchVariantsResponse
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :next_page_token, as: 'nextPageToken'
|
|
|
|
collection :variants, as: 'variants', class: Google::Apis::GenomicsV1::Variant, decorator: Google::Apis::GenomicsV1::Variant::Representation
|
|
|
|
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class SetIamPolicyRequest
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :policy, as: 'policy', class: Google::Apis::GenomicsV1::Policy, decorator: Google::Apis::GenomicsV1::Policy::Representation
|
2017-08-25 19:54:22 +00:00
|
|
|
|
2017-07-12 20:10:42 +00:00
|
|
|
end
|
|
|
|
end
|
|
|
|
|
2017-08-25 19:54:22 +00:00
|
|
|
class Status
|
2017-07-12 20:10:42 +00:00
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
2017-08-25 19:54:22 +00:00
|
|
|
property :code, as: 'code'
|
|
|
|
collection :details, as: 'details'
|
|
|
|
property :message, as: 'message'
|
2017-07-12 20:10:42 +00:00
|
|
|
end
|
|
|
|
end
|
2018-01-18 00:35:53 +00:00
|
|
|
|
|
|
|
class TestIamPermissionsRequest
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
collection :permissions, as: 'permissions'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class TestIamPermissionsResponse
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
collection :permissions, as: 'permissions'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class Transcript
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :coding_sequence, as: 'codingSequence', class: Google::Apis::GenomicsV1::CodingSequence, decorator: Google::Apis::GenomicsV1::CodingSequence::Representation
|
|
|
|
|
|
|
|
collection :exons, as: 'exons', class: Google::Apis::GenomicsV1::Exon, decorator: Google::Apis::GenomicsV1::Exon::Representation
|
|
|
|
|
|
|
|
property :gene_id, as: 'geneId'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class UndeleteDatasetRequest
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
2018-02-21 00:36:04 +00:00
|
|
|
class UnexpectedExitStatusEvent
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :action_id, as: 'actionId'
|
|
|
|
property :exit_status, as: 'exitStatus'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
2018-01-18 00:35:53 +00:00
|
|
|
class Variant
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
collection :alternate_bases, as: 'alternateBases'
|
|
|
|
collection :calls, as: 'calls', class: Google::Apis::GenomicsV1::VariantCall, decorator: Google::Apis::GenomicsV1::VariantCall::Representation
|
|
|
|
|
|
|
|
property :created, :numeric_string => true, as: 'created'
|
|
|
|
property :end, :numeric_string => true, as: 'end'
|
|
|
|
collection :filter, as: 'filter'
|
|
|
|
property :id, as: 'id'
|
|
|
|
hash :info, as: 'info', :class => Array do
|
|
|
|
include Representable::JSON::Collection
|
|
|
|
items
|
|
|
|
end
|
|
|
|
|
|
|
|
collection :names, as: 'names'
|
|
|
|
property :quality, as: 'quality'
|
|
|
|
property :reference_bases, as: 'referenceBases'
|
|
|
|
property :reference_name, as: 'referenceName'
|
|
|
|
property :start, :numeric_string => true, as: 'start'
|
|
|
|
property :variant_set_id, as: 'variantSetId'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class VariantAnnotation
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :alternate_bases, as: 'alternateBases'
|
|
|
|
property :clinical_significance, as: 'clinicalSignificance'
|
|
|
|
collection :conditions, as: 'conditions', class: Google::Apis::GenomicsV1::ClinicalCondition, decorator: Google::Apis::GenomicsV1::ClinicalCondition::Representation
|
|
|
|
|
|
|
|
property :effect, as: 'effect'
|
|
|
|
property :gene_id, as: 'geneId'
|
|
|
|
collection :transcript_ids, as: 'transcriptIds'
|
|
|
|
property :type, as: 'type'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class VariantCall
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :call_set_id, as: 'callSetId'
|
|
|
|
property :call_set_name, as: 'callSetName'
|
|
|
|
collection :genotype, as: 'genotype'
|
|
|
|
collection :genotype_likelihood, as: 'genotypeLikelihood'
|
|
|
|
hash :info, as: 'info', :class => Array do
|
|
|
|
include Representable::JSON::Collection
|
|
|
|
items
|
|
|
|
end
|
|
|
|
|
|
|
|
property :phaseset, as: 'phaseset'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class VariantSet
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :dataset_id, as: 'datasetId'
|
|
|
|
property :description, as: 'description'
|
|
|
|
property :id, as: 'id'
|
|
|
|
collection :metadata, as: 'metadata', class: Google::Apis::GenomicsV1::VariantSetMetadata, decorator: Google::Apis::GenomicsV1::VariantSetMetadata::Representation
|
|
|
|
|
|
|
|
property :name, as: 'name'
|
|
|
|
collection :reference_bounds, as: 'referenceBounds', class: Google::Apis::GenomicsV1::ReferenceBound, decorator: Google::Apis::GenomicsV1::ReferenceBound::Representation
|
|
|
|
|
|
|
|
property :reference_set_id, as: 'referenceSetId'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class VariantSetMetadata
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :description, as: 'description'
|
|
|
|
property :id, as: 'id'
|
|
|
|
hash :info, as: 'info', :class => Array do
|
|
|
|
include Representable::JSON::Collection
|
|
|
|
items
|
|
|
|
end
|
|
|
|
|
|
|
|
property :key, as: 'key'
|
|
|
|
property :number, as: 'number'
|
|
|
|
property :type, as: 'type'
|
|
|
|
property :value, as: 'value'
|
|
|
|
end
|
|
|
|
end
|
2018-02-21 00:36:04 +00:00
|
|
|
|
|
|
|
class WorkerAssignedEvent
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :instance, as: 'instance'
|
|
|
|
property :zone, as: 'zone'
|
|
|
|
end
|
|
|
|
end
|
|
|
|
|
|
|
|
class WorkerReleasedEvent
|
|
|
|
# @private
|
|
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
|
|
property :instance, as: 'instance'
|
|
|
|
property :zone, as: 'zone'
|
|
|
|
end
|
|
|
|
end
|
2015-07-20 21:49:34 +00:00
|
|
|
end
|
|
|
|
end
|
|
|
|
end
|