google-api-ruby-client/generated/google/apis/genomics_v2alpha1/service.rb

281 lines
16 KiB
Ruby
Raw Normal View History

# Copyright 2015 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
require 'google/apis/core/base_service'
require 'google/apis/core/json_representation'
require 'google/apis/core/hashable'
require 'google/apis/errors'
module Google
module Apis
module GenomicsV2alpha1
# Genomics API
#
# Uploads, processes, queries, and searches Genomics data in the cloud.
#
# @example
# require 'google/apis/genomics_v2alpha1'
#
# Genomics = Google::Apis::GenomicsV2alpha1 # Alias the module
# service = Genomics::GenomicsService.new
#
# @see https://cloud.google.com/genomics
class GenomicsService < Google::Apis::Core::BaseService
# @return [String]
# API key. Your API key identifies your project and provides you with API access,
# quota, and reports. Required unless you provide an OAuth 2.0 token.
attr_accessor :key
# @return [String]
# Available to use for quota purposes for server-side applications. Can be any
# arbitrary string assigned to a user, but should not exceed 40 characters.
attr_accessor :quota_user
def initialize
super('https://genomics.googleapis.com/', '')
@batch_path = 'batch'
end
# Runs a pipeline. The returned Operation's metadata field will contain a
# google.genomics.v2alpha1.Metadata object describing the status of the
# pipeline execution. The [response] field will contain a
# google.genomics.v2alpha1.RunPipelineResponse object if the pipeline
# completes successfully.
Autogenerated update (2018-08-22) Delete: - spectrum_v1explorer Update: - abusiveexperiencereport_v1 - adexchangebuyer2_v2beta1 - adexchangebuyer_v1_2 - adexchangebuyer_v1_3 - adexchangebuyer_v1_4 - adexchangeseller_v1 - adexchangeseller_v1_1 - adexchangeseller_v2_0 - adexperiencereport_v1 - admin_datatransfer_v1 - admin_directory_v1 - admin_reports_v1 - adsense_v1_4 - adsensehost_v4_1 - analytics_v2_4 - analytics_v3 - analyticsreporting_v4 - androiddeviceprovisioning_v1 - androidenterprise_v1 - androidmanagement_v1 - androidpublisher_v1 - androidpublisher_v1_1 - androidpublisher_v2 - androidpublisher_v3 - appengine_v1 - appengine_v1beta - appsactivity_v1 - appsmarket_v2 - appstate_v1 - bigquery_v2 - bigquerydatatransfer_v1 - blogger_v2 - blogger_v3 - books_v1 - calendar_v3 - chat_v1 - civicinfo_v2 - classroom_v1 - cloudbilling_v1 - cloudbuild_v1 - clouddebugger_v2 - clouderrorreporting_v1beta1 - cloudiot_v1 - cloudkms_v1 - cloudprofiler_v2 - cloudresourcemanager_v1 - cloudresourcemanager_v1beta1 - cloudresourcemanager_v2 - cloudresourcemanager_v2beta1 - cloudshell_v1alpha1 - cloudtasks_v2beta2 - cloudtrace_v1 - cloudtrace_v2 - composer_v1beta1 - compute_alpha - compute_beta - compute_v1 - container_v1 - container_v1beta1 - content_v2 - content_v2sandbox - customsearch_v1 - dataproc_v1beta2 - datastore_v1 - datastore_v1beta1 - datastore_v1beta3 - deploymentmanager_alpha - deploymentmanager_v2 - deploymentmanager_v2beta - dfareporting_v2_8 - dfareporting_v3_0 - dfareporting_v3_1 - dialogflow_v2 - dialogflow_v2beta1 - discovery_v1 - dlp_v2 - dns_v1 - dns_v1beta2 - dns_v2beta1 - doubleclickbidmanager_v1 - doubleclicksearch_v2 - drive_v2 - drive_v3 - firestore_v1beta1 - fitness_v1 - fusiontables_v1 - fusiontables_v2 - games_configuration_v1configuration - games_management_v1management - games_v1 - genomics_v1 - genomics_v1alpha2 - genomics_v2alpha1 - gmail_v1 - groupsmigration_v1 - groupssettings_v1 - iam_v1 - iamcredentials_v1 - identitytoolkit_v3 - jobs_v2 - licensing_v1 - logging_v2 - logging_v2beta1 - mirror_v1 - ml_v1 - monitoring_v3 - oauth2_v1 - oauth2_v2 - pagespeedonline_v1 - pagespeedonline_v2 - pagespeedonline_v4 - playcustomapp_v1 - plus_domains_v1 - plus_v1 - poly_v1 - pubsub_v1 - pubsub_v1beta2 - redis_v1beta1 - replicapool_v1beta1 - replicapoolupdater_v1beta1 - reseller_v1 - runtimeconfig_v1beta1 - script_v1 - servicebroker_v1 - servicebroker_v1alpha1 - servicebroker_v1beta1 - serviceconsumermanagement_v1 - servicecontrol_v1 - servicemanagement_v1 - serviceusage_v1 - serviceusage_v1beta1 - serviceuser_v1 - sheets_v4 - site_verification_v1 - slides_v1 - sourcerepo_v1 - sqladmin_v1beta4 - storage_v1 - storage_v1beta1 - storage_v1beta2 - surveys_v2 - tagmanager_v1 - tagmanager_v2 - tasks_v1 - testing_v1 - texttospeech_v1beta1 - toolresults_v1beta3 - tpu_v1 - tpu_v1alpha1 - urlshortener_v1 - vault_v1 - vision_v1 - vision_v1p1beta1 - vision_v1p2beta1 - webfonts_v1 - webmasters_v3 - websecurityscanner_v1alpha - youtube_analytics_v1 - youtube_analytics_v1beta1 - youtube_partner_v1 - youtube_v3
2018-08-22 21:14:52 +00:00
# **Note:** Before you can use this method, the Genomics Service Agent
# must have access to your project. This is done automatically when the
# Cloud Genomics API is first enabled, but if you delete this permission,
# or if you enabled the Cloud Genomics API before the v2alpha1 API
# launch, you must disable and re-enable the API to grant the Genomics
# Service Agent the required permissions.
# Authorization requires the following [Google
# IAM](https://cloud.google.com/iam/) permission:
# * `genomics.operations.create`
# [1]: /genomics/gsa
# @param [Google::Apis::GenomicsV2alpha1::RunPipelineRequest] run_pipeline_request_object
# @param [String] fields
# Selector specifying which fields to include in a partial response.
# @param [String] quota_user
# Available to use for quota purposes for server-side applications. Can be any
# arbitrary string assigned to a user, but should not exceed 40 characters.
# @param [Google::Apis::RequestOptions] options
# Request-specific options
#
# @yield [result, err] Result & error if block supplied
# @yieldparam result [Google::Apis::GenomicsV2alpha1::Operation] parsed result object
# @yieldparam err [StandardError] error object if request failed
#
# @return [Google::Apis::GenomicsV2alpha1::Operation]
#
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
# @raise [Google::Apis::AuthorizationError] Authorization is required
def run_pipeline(run_pipeline_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
command = make_simple_command(:post, 'v2alpha1/pipelines:run', options)
command.request_representation = Google::Apis::GenomicsV2alpha1::RunPipelineRequest::Representation
command.request_object = run_pipeline_request_object
command.response_representation = Google::Apis::GenomicsV2alpha1::Operation::Representation
command.response_class = Google::Apis::GenomicsV2alpha1::Operation
command.query['fields'] = fields unless fields.nil?
command.query['quotaUser'] = quota_user unless quota_user.nil?
execute_or_queue_command(command, &block)
end
# Starts asynchronous cancellation on a long-running operation.
# The server makes a best effort to cancel the operation, but success is not
# guaranteed. Clients may use Operations.GetOperation
# or Operations.ListOperations
# to check whether the cancellation succeeded or the operation completed
# despite cancellation.
# Authorization requires the following [Google IAM](https://cloud.google.com/iam)
# permission&#58;
# * `genomics.operations.cancel`
# @param [String] name
# The name of the operation resource to be cancelled.
# @param [Google::Apis::GenomicsV2alpha1::CancelOperationRequest] cancel_operation_request_object
# @param [String] fields
# Selector specifying which fields to include in a partial response.
# @param [String] quota_user
# Available to use for quota purposes for server-side applications. Can be any
# arbitrary string assigned to a user, but should not exceed 40 characters.
# @param [Google::Apis::RequestOptions] options
# Request-specific options
#
# @yield [result, err] Result & error if block supplied
# @yieldparam result [Google::Apis::GenomicsV2alpha1::Empty] parsed result object
# @yieldparam err [StandardError] error object if request failed
#
# @return [Google::Apis::GenomicsV2alpha1::Empty]
#
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
# @raise [Google::Apis::AuthorizationError] Authorization is required
def cancel_operation(name, cancel_operation_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
command = make_simple_command(:post, 'v2alpha1/{+name}:cancel', options)
command.request_representation = Google::Apis::GenomicsV2alpha1::CancelOperationRequest::Representation
command.request_object = cancel_operation_request_object
command.response_representation = Google::Apis::GenomicsV2alpha1::Empty::Representation
command.response_class = Google::Apis::GenomicsV2alpha1::Empty
command.params['name'] = name unless name.nil?
command.query['fields'] = fields unless fields.nil?
command.query['quotaUser'] = quota_user unless quota_user.nil?
execute_or_queue_command(command, &block)
end
# Gets the latest state of a long-running operation.
# Clients can use this method to poll the operation result at intervals as
# recommended by the API service.
# Authorization requires the following [Google IAM](https://cloud.google.com/iam)
# permission&#58;
# * `genomics.operations.get`
# @param [String] name
# The name of the operation resource.
# @param [String] fields
# Selector specifying which fields to include in a partial response.
# @param [String] quota_user
# Available to use for quota purposes for server-side applications. Can be any
# arbitrary string assigned to a user, but should not exceed 40 characters.
# @param [Google::Apis::RequestOptions] options
# Request-specific options
#
# @yield [result, err] Result & error if block supplied
# @yieldparam result [Google::Apis::GenomicsV2alpha1::Operation] parsed result object
# @yieldparam err [StandardError] error object if request failed
#
# @return [Google::Apis::GenomicsV2alpha1::Operation]
#
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
# @raise [Google::Apis::AuthorizationError] Authorization is required
def get_project_operation(name, fields: nil, quota_user: nil, options: nil, &block)
command = make_simple_command(:get, 'v2alpha1/{+name}', options)
command.response_representation = Google::Apis::GenomicsV2alpha1::Operation::Representation
command.response_class = Google::Apis::GenomicsV2alpha1::Operation
command.params['name'] = name unless name.nil?
command.query['fields'] = fields unless fields.nil?
command.query['quotaUser'] = quota_user unless quota_user.nil?
execute_or_queue_command(command, &block)
end
# Lists operations that match the specified filter in the request.
# Authorization requires the following [Google IAM](https://cloud.google.com/iam)
# permission&#58;
# * `genomics.operations.list`
# @param [String] name
# The name of the operation's parent resource.
# @param [String] filter
# A string for filtering Operations.
# In v2alpha1, the following filter fields are supported&#58;
# * createTime&#58; The time this job was created
# * events&#58; The set of event (names) that have occurred while running
# the pipeline. The &#58; operator can be used to determine if a
# particular event has occurred.
# * error&#58; If the pipeline is running, this value is NULL. Once the
# pipeline finishes, the value is the standard Google error code.
# * labels.key or labels."key with space" where key is a label key.
Autogenerated update (2018-08-22) Delete: - spectrum_v1explorer Update: - abusiveexperiencereport_v1 - adexchangebuyer2_v2beta1 - adexchangebuyer_v1_2 - adexchangebuyer_v1_3 - adexchangebuyer_v1_4 - adexchangeseller_v1 - adexchangeseller_v1_1 - adexchangeseller_v2_0 - adexperiencereport_v1 - admin_datatransfer_v1 - admin_directory_v1 - admin_reports_v1 - adsense_v1_4 - adsensehost_v4_1 - analytics_v2_4 - analytics_v3 - analyticsreporting_v4 - androiddeviceprovisioning_v1 - androidenterprise_v1 - androidmanagement_v1 - androidpublisher_v1 - androidpublisher_v1_1 - androidpublisher_v2 - androidpublisher_v3 - appengine_v1 - appengine_v1beta - appsactivity_v1 - appsmarket_v2 - appstate_v1 - bigquery_v2 - bigquerydatatransfer_v1 - blogger_v2 - blogger_v3 - books_v1 - calendar_v3 - chat_v1 - civicinfo_v2 - classroom_v1 - cloudbilling_v1 - cloudbuild_v1 - clouddebugger_v2 - clouderrorreporting_v1beta1 - cloudiot_v1 - cloudkms_v1 - cloudprofiler_v2 - cloudresourcemanager_v1 - cloudresourcemanager_v1beta1 - cloudresourcemanager_v2 - cloudresourcemanager_v2beta1 - cloudshell_v1alpha1 - cloudtasks_v2beta2 - cloudtrace_v1 - cloudtrace_v2 - composer_v1beta1 - compute_alpha - compute_beta - compute_v1 - container_v1 - container_v1beta1 - content_v2 - content_v2sandbox - customsearch_v1 - dataproc_v1beta2 - datastore_v1 - datastore_v1beta1 - datastore_v1beta3 - deploymentmanager_alpha - deploymentmanager_v2 - deploymentmanager_v2beta - dfareporting_v2_8 - dfareporting_v3_0 - dfareporting_v3_1 - dialogflow_v2 - dialogflow_v2beta1 - discovery_v1 - dlp_v2 - dns_v1 - dns_v1beta2 - dns_v2beta1 - doubleclickbidmanager_v1 - doubleclicksearch_v2 - drive_v2 - drive_v3 - firestore_v1beta1 - fitness_v1 - fusiontables_v1 - fusiontables_v2 - games_configuration_v1configuration - games_management_v1management - games_v1 - genomics_v1 - genomics_v1alpha2 - genomics_v2alpha1 - gmail_v1 - groupsmigration_v1 - groupssettings_v1 - iam_v1 - iamcredentials_v1 - identitytoolkit_v3 - jobs_v2 - licensing_v1 - logging_v2 - logging_v2beta1 - mirror_v1 - ml_v1 - monitoring_v3 - oauth2_v1 - oauth2_v2 - pagespeedonline_v1 - pagespeedonline_v2 - pagespeedonline_v4 - playcustomapp_v1 - plus_domains_v1 - plus_v1 - poly_v1 - pubsub_v1 - pubsub_v1beta2 - redis_v1beta1 - replicapool_v1beta1 - replicapoolupdater_v1beta1 - reseller_v1 - runtimeconfig_v1beta1 - script_v1 - servicebroker_v1 - servicebroker_v1alpha1 - servicebroker_v1beta1 - serviceconsumermanagement_v1 - servicecontrol_v1 - servicemanagement_v1 - serviceusage_v1 - serviceusage_v1beta1 - serviceuser_v1 - sheets_v4 - site_verification_v1 - slides_v1 - sourcerepo_v1 - sqladmin_v1beta4 - storage_v1 - storage_v1beta1 - storage_v1beta2 - surveys_v2 - tagmanager_v1 - tagmanager_v2 - tasks_v1 - testing_v1 - texttospeech_v1beta1 - toolresults_v1beta3 - tpu_v1 - tpu_v1alpha1 - urlshortener_v1 - vault_v1 - vision_v1 - vision_v1p1beta1 - vision_v1p2beta1 - webfonts_v1 - webmasters_v3 - websecurityscanner_v1alpha - youtube_analytics_v1 - youtube_analytics_v1beta1 - youtube_partner_v1 - youtube_v3
2018-08-22 21:14:52 +00:00
# * done&#58; If the pipeline is running, this value is false. Once the
# pipeline finishes, the value is true.
# In v1 and v1alpha2, the following filter fields are supported&#58;
# * projectId&#58; Required. Corresponds to
# OperationMetadata.projectId.
# * createTime&#58; The time this job was created, in seconds from the
# [epoch](http://en.wikipedia.org/wiki/Unix_time). Can use `>=` and/or `<=`
# operators.
# * status&#58; Can be `RUNNING`, `SUCCESS`, `FAILURE`, or `CANCELED`. Only
# one status may be specified.
# * labels.key where key is a label key.
# Examples&#58;
# * `projectId = my-project AND createTime >= 1432140000`
# * `projectId = my-project AND createTime >= 1432140000 AND createTime <=
# 1432150000 AND status = RUNNING`
# * `projectId = my-project AND labels.color = *`
# * `projectId = my-project AND labels.color = red`
# @param [Fixnum] page_size
# The maximum number of results to return. The maximum value is 256.
# @param [String] page_token
# The standard list page token.
# @param [String] fields
# Selector specifying which fields to include in a partial response.
# @param [String] quota_user
# Available to use for quota purposes for server-side applications. Can be any
# arbitrary string assigned to a user, but should not exceed 40 characters.
# @param [Google::Apis::RequestOptions] options
# Request-specific options
#
# @yield [result, err] Result & error if block supplied
# @yieldparam result [Google::Apis::GenomicsV2alpha1::ListOperationsResponse] parsed result object
# @yieldparam err [StandardError] error object if request failed
#
# @return [Google::Apis::GenomicsV2alpha1::ListOperationsResponse]
#
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
# @raise [Google::Apis::AuthorizationError] Authorization is required
def list_project_operations(name, filter: nil, page_size: nil, page_token: nil, fields: nil, quota_user: nil, options: nil, &block)
command = make_simple_command(:get, 'v2alpha1/{+name}', options)
command.response_representation = Google::Apis::GenomicsV2alpha1::ListOperationsResponse::Representation
command.response_class = Google::Apis::GenomicsV2alpha1::ListOperationsResponse
command.params['name'] = name unless name.nil?
command.query['filter'] = filter unless filter.nil?
command.query['pageSize'] = page_size unless page_size.nil?
command.query['pageToken'] = page_token unless page_token.nil?
command.query['fields'] = fields unless fields.nil?
command.query['quotaUser'] = quota_user unless quota_user.nil?
execute_or_queue_command(command, &block)
end
# The worker uses this method to retrieve the assigned operation and
# provide periodic status updates.
# @param [String] id
# The worker id, assigned when it was created.
# @param [Google::Apis::GenomicsV2alpha1::CheckInRequest] check_in_request_object
# @param [String] fields
# Selector specifying which fields to include in a partial response.
# @param [String] quota_user
# Available to use for quota purposes for server-side applications. Can be any
# arbitrary string assigned to a user, but should not exceed 40 characters.
# @param [Google::Apis::RequestOptions] options
# Request-specific options
#
# @yield [result, err] Result & error if block supplied
# @yieldparam result [Google::Apis::GenomicsV2alpha1::CheckInResponse] parsed result object
# @yieldparam err [StandardError] error object if request failed
#
# @return [Google::Apis::GenomicsV2alpha1::CheckInResponse]
#
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
# @raise [Google::Apis::AuthorizationError] Authorization is required
def check_worker_in(id, check_in_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
command = make_simple_command(:post, 'v2alpha1/workers/{id}:checkIn', options)
command.request_representation = Google::Apis::GenomicsV2alpha1::CheckInRequest::Representation
command.request_object = check_in_request_object
command.response_representation = Google::Apis::GenomicsV2alpha1::CheckInResponse::Representation
command.response_class = Google::Apis::GenomicsV2alpha1::CheckInResponse
command.params['id'] = id unless id.nil?
command.query['fields'] = fields unless fields.nil?
command.query['quotaUser'] = quota_user unless quota_user.nil?
execute_or_queue_command(command, &block)
end
protected
def apply_command_defaults(command)
command.query['key'] = key unless key.nil?
command.query['quotaUser'] = quota_user unless quota_user.nil?
end
end
end
end
end