google-api-ruby-client/generated/google/apis/genomics_v1beta2/representations.rb

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2015-06-23 23:05:46 +00:00
# Copyright 2015 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
require 'date'
require 'google/apis/core/base_service'
require 'google/apis/core/json_representation'
require 'google/apis/core/hashable'
require 'google/apis/errors'
module Google
module Apis
module GenomicsV1beta2
class AlignReadGroupSetsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class AlignReadGroupSetsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Annotation
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class AnnotationSet
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class BatchAnnotationsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class BatchAnnotationsResponseEntry
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class BatchAnnotationsResponseEntryStatus
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class BatchCreateAnnotationsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Call
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class CallReadGroupSetsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class CallReadGroupSetsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class CallSet
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class CigarUnit
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class CoverageBucket
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Dataset
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ExperimentalCreateJobRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ExperimentalCreateJobResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ExportReadGroupSetsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ExportReadGroupSetsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ExportVariantSetRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ExportVariantSetResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ExternalId
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class FastqMetadata
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ImportReadGroupSetsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ImportReadGroupSetsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ImportVariantsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ImportVariantsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Int32Value
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class InterleavedFastqSource
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Job
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class JobRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class KeyValue
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class LinearAlignment
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ListBasesResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ListCoverageBucketsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ListDatasetsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class MergeVariantsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Metadata
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class PairedFastqSource
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Position
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class QueryRange
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Range
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class RangePosition
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Read
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ReadGroup
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ReadGroupExperiment
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ReadGroupProgram
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ReadGroupSet
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Reference
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ReferenceBound
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class ReferenceSet
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchAnnotationSetsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchAnnotationSetsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchAnnotationsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchAnnotationsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchCallSetsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchCallSetsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchJobsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchJobsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchReadGroupSetsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchReadGroupSetsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchReadsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchReadsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchReferenceSetsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchReferenceSetsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchReferencesRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchReferencesResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchVariantSetsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchVariantSetsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchVariantsRequest
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class SearchVariantsResponse
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Transcript
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class TranscriptCodingSequence
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class TranscriptExon
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class Variant
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class VariantAnnotation
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class VariantAnnotationCondition
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class VariantSet
class Representation < Google::Apis::Core::JsonRepresentation; end
end
class AlignReadGroupSetsRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :bam_source_uris, as: 'bamSourceUris'
property :dataset_id, as: 'datasetId'
property :interleaved_fastq_source, as: 'interleavedFastqSource', class: Google::Apis::GenomicsV1beta2::InterleavedFastqSource, decorator: Google::Apis::GenomicsV1beta2::InterleavedFastqSource::Representation
property :paired_fastq_source, as: 'pairedFastqSource', class: Google::Apis::GenomicsV1beta2::PairedFastqSource, decorator: Google::Apis::GenomicsV1beta2::PairedFastqSource::Representation
property :read_group_set_id, as: 'readGroupSetId'
end
end
class AlignReadGroupSetsResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :job_id, as: 'jobId'
end
end
class Annotation
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :annotation_set_id, as: 'annotationSetId'
property :id, as: 'id'
hash :info, as: 'info', :class => Array do
include Representable::JSON::Collection
items
end
property :name, as: 'name'
property :position, as: 'position', class: Google::Apis::GenomicsV1beta2::RangePosition, decorator: Google::Apis::GenomicsV1beta2::RangePosition::Representation
property :transcript, as: 'transcript', class: Google::Apis::GenomicsV1beta2::Transcript, decorator: Google::Apis::GenomicsV1beta2::Transcript::Representation
property :type, as: 'type'
property :variant, as: 'variant', class: Google::Apis::GenomicsV1beta2::VariantAnnotation, decorator: Google::Apis::GenomicsV1beta2::VariantAnnotation::Representation
end
end
class AnnotationSet
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :dataset_id, as: 'datasetId'
property :id, as: 'id'
hash :info, as: 'info', :class => Array do
include Representable::JSON::Collection
items
end
property :name, as: 'name'
property :reference_set_id, as: 'referenceSetId'
property :source_uri, as: 'sourceUri'
property :type, as: 'type'
end
end
class BatchAnnotationsResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :entries, as: 'entries', class: Google::Apis::GenomicsV1beta2::BatchAnnotationsResponseEntry, decorator: Google::Apis::GenomicsV1beta2::BatchAnnotationsResponseEntry::Representation
end
end
class BatchAnnotationsResponseEntry
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :annotation, as: 'annotation', class: Google::Apis::GenomicsV1beta2::Annotation, decorator: Google::Apis::GenomicsV1beta2::Annotation::Representation
property :status, as: 'status', class: Google::Apis::GenomicsV1beta2::BatchAnnotationsResponseEntryStatus, decorator: Google::Apis::GenomicsV1beta2::BatchAnnotationsResponseEntryStatus::Representation
end
end
class BatchAnnotationsResponseEntryStatus
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :code, as: 'code'
property :message, as: 'message'
end
end
class BatchCreateAnnotationsRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :annotations, as: 'annotations', class: Google::Apis::GenomicsV1beta2::Annotation, decorator: Google::Apis::GenomicsV1beta2::Annotation::Representation
end
end
class Call
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :call_set_id, as: 'callSetId'
property :call_set_name, as: 'callSetName'
collection :genotype, as: 'genotype'
collection :genotype_likelihood, as: 'genotypeLikelihood'
hash :info, as: 'info', :class => Array do
include Representable::JSON::Collection
items
end
property :phaseset, as: 'phaseset'
end
end
class CallReadGroupSetsRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :dataset_id, as: 'datasetId'
property :read_group_set_id, as: 'readGroupSetId'
collection :source_uris, as: 'sourceUris'
end
end
class CallReadGroupSetsResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :job_id, as: 'jobId'
end
end
class CallSet
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :created, as: 'created'
property :id, as: 'id'
hash :info, as: 'info', :class => Array do
include Representable::JSON::Collection
items
end
property :name, as: 'name'
property :sample_id, as: 'sampleId'
collection :variant_set_ids, as: 'variantSetIds'
end
end
class CigarUnit
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :operation, as: 'operation'
property :operation_length, as: 'operationLength'
property :reference_sequence, as: 'referenceSequence'
end
end
class CoverageBucket
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :mean_coverage, as: 'meanCoverage'
property :range, as: 'range', class: Google::Apis::GenomicsV1beta2::Range, decorator: Google::Apis::GenomicsV1beta2::Range::Representation
end
end
class Dataset
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :create_time, as: 'createTime'
property :id, as: 'id'
property :is_public, as: 'isPublic'
property :name, as: 'name'
property :project_number, as: 'projectNumber'
end
end
class ExperimentalCreateJobRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :align, as: 'align'
property :call_variants, as: 'callVariants'
property :gcs_output_path, as: 'gcsOutputPath'
collection :paired_source_uris, as: 'pairedSourceUris'
property :project_number, as: 'projectNumber'
collection :source_uris, as: 'sourceUris'
end
end
class ExperimentalCreateJobResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :job_id, as: 'jobId'
end
end
class ExportReadGroupSetsRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :export_uri, as: 'exportUri'
property :project_number, as: 'projectNumber'
collection :read_group_set_ids, as: 'readGroupSetIds'
collection :reference_names, as: 'referenceNames'
end
end
class ExportReadGroupSetsResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :job_id, as: 'jobId'
end
end
class ExportVariantSetRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :bigquery_dataset, as: 'bigqueryDataset'
property :bigquery_table, as: 'bigqueryTable'
collection :call_set_ids, as: 'callSetIds'
property :format, as: 'format'
property :project_number, as: 'projectNumber'
end
end
class ExportVariantSetResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :job_id, as: 'jobId'
end
end
class ExternalId
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :id, as: 'id'
property :source_name, as: 'sourceName'
end
end
class FastqMetadata
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :library_name, as: 'libraryName'
property :platform_name, as: 'platformName'
property :platform_unit, as: 'platformUnit'
property :read_group_name, as: 'readGroupName'
property :sample_name, as: 'sampleName'
end
end
class ImportReadGroupSetsRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :dataset_id, as: 'datasetId'
property :partition_strategy, as: 'partitionStrategy'
property :reference_set_id, as: 'referenceSetId'
collection :source_uris, as: 'sourceUris'
end
end
class ImportReadGroupSetsResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :job_id, as: 'jobId'
end
end
class ImportVariantsRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :format, as: 'format'
property :normalize_reference_names, as: 'normalizeReferenceNames'
collection :source_uris, as: 'sourceUris'
end
end
class ImportVariantsResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :job_id, as: 'jobId'
end
end
class Int32Value
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :value, as: 'value'
end
end
class InterleavedFastqSource
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :metadata, as: 'metadata', class: Google::Apis::GenomicsV1beta2::FastqMetadata, decorator: Google::Apis::GenomicsV1beta2::FastqMetadata::Representation
collection :source_uris, as: 'sourceUris'
end
end
class Job
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :created, as: 'created'
property :detailed_status, as: 'detailedStatus'
collection :errors, as: 'errors'
property :id, as: 'id'
collection :imported_ids, as: 'importedIds'
property :project_number, as: 'projectNumber'
property :request, as: 'request', class: Google::Apis::GenomicsV1beta2::JobRequest, decorator: Google::Apis::GenomicsV1beta2::JobRequest::Representation
property :status, as: 'status'
collection :warnings, as: 'warnings'
end
end
class JobRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :destination, as: 'destination'
collection :source, as: 'source'
property :type, as: 'type'
end
end
class KeyValue
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :key, as: 'key'
collection :value, as: 'value'
end
end
class LinearAlignment
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :cigar, as: 'cigar', class: Google::Apis::GenomicsV1beta2::CigarUnit, decorator: Google::Apis::GenomicsV1beta2::CigarUnit::Representation
property :mapping_quality, as: 'mappingQuality'
property :position, as: 'position', class: Google::Apis::GenomicsV1beta2::Position, decorator: Google::Apis::GenomicsV1beta2::Position::Representation
end
end
class ListBasesResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :next_page_token, as: 'nextPageToken'
property :offset, as: 'offset'
property :sequence, as: 'sequence'
end
end
class ListCoverageBucketsResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :bucket_width, as: 'bucketWidth'
collection :coverage_buckets, as: 'coverageBuckets', class: Google::Apis::GenomicsV1beta2::CoverageBucket, decorator: Google::Apis::GenomicsV1beta2::CoverageBucket::Representation
property :next_page_token, as: 'nextPageToken'
end
end
class ListDatasetsResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :datasets, as: 'datasets', class: Google::Apis::GenomicsV1beta2::Dataset, decorator: Google::Apis::GenomicsV1beta2::Dataset::Representation
property :next_page_token, as: 'nextPageToken'
end
end
class MergeVariantsRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :variants, as: 'variants', class: Google::Apis::GenomicsV1beta2::Variant, decorator: Google::Apis::GenomicsV1beta2::Variant::Representation
end
end
class Metadata
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :description, as: 'description'
property :id, as: 'id'
hash :info, as: 'info', :class => Array do
include Representable::JSON::Collection
items
end
property :key, as: 'key'
property :number, as: 'number'
property :type, as: 'type'
property :value, as: 'value'
end
end
class PairedFastqSource
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :first_source_uris, as: 'firstSourceUris'
property :metadata, as: 'metadata', class: Google::Apis::GenomicsV1beta2::FastqMetadata, decorator: Google::Apis::GenomicsV1beta2::FastqMetadata::Representation
collection :second_source_uris, as: 'secondSourceUris'
end
end
class Position
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :position, as: 'position'
property :reference_name, as: 'referenceName'
property :reverse_strand, as: 'reverseStrand'
end
end
class QueryRange
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :end, as: 'end'
property :reference_id, as: 'referenceId'
property :reference_name, as: 'referenceName'
property :start, as: 'start'
end
end
class Range
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :end, as: 'end'
property :reference_name, as: 'referenceName'
property :start, as: 'start'
end
end
class RangePosition
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :end, as: 'end'
property :reference_id, as: 'referenceId'
property :reference_name, as: 'referenceName'
property :reverse_strand, as: 'reverseStrand'
property :start, as: 'start'
end
end
class Read
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :aligned_quality, as: 'alignedQuality'
property :aligned_sequence, as: 'alignedSequence'
property :alignment, as: 'alignment', class: Google::Apis::GenomicsV1beta2::LinearAlignment, decorator: Google::Apis::GenomicsV1beta2::LinearAlignment::Representation
property :duplicate_fragment, as: 'duplicateFragment'
property :failed_vendor_quality_checks, as: 'failedVendorQualityChecks'
property :fragment_length, as: 'fragmentLength'
property :fragment_name, as: 'fragmentName'
property :id, as: 'id'
hash :info, as: 'info', :class => Array do
include Representable::JSON::Collection
items
end
property :next_mate_position, as: 'nextMatePosition', class: Google::Apis::GenomicsV1beta2::Position, decorator: Google::Apis::GenomicsV1beta2::Position::Representation
property :number_reads, as: 'numberReads'
property :proper_placement, as: 'properPlacement'
property :read_group_id, as: 'readGroupId'
property :read_group_set_id, as: 'readGroupSetId'
property :read_number, as: 'readNumber'
property :secondary_alignment, as: 'secondaryAlignment'
property :supplementary_alignment, as: 'supplementaryAlignment'
end
end
class ReadGroup
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :dataset_id, as: 'datasetId'
property :description, as: 'description'
property :experiment, as: 'experiment', class: Google::Apis::GenomicsV1beta2::ReadGroupExperiment, decorator: Google::Apis::GenomicsV1beta2::ReadGroupExperiment::Representation
property :id, as: 'id'
hash :info, as: 'info', :class => Array do
include Representable::JSON::Collection
items
end
property :name, as: 'name'
property :predicted_insert_size, as: 'predictedInsertSize'
collection :programs, as: 'programs', class: Google::Apis::GenomicsV1beta2::ReadGroupProgram, decorator: Google::Apis::GenomicsV1beta2::ReadGroupProgram::Representation
property :reference_set_id, as: 'referenceSetId'
property :sample_id, as: 'sampleId'
end
end
class ReadGroupExperiment
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :instrument_model, as: 'instrumentModel'
property :library_id, as: 'libraryId'
property :platform_unit, as: 'platformUnit'
property :sequencing_center, as: 'sequencingCenter'
end
end
class ReadGroupProgram
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :command_line, as: 'commandLine'
property :id, as: 'id'
property :name, as: 'name'
property :prev_program_id, as: 'prevProgramId'
property :version, as: 'version'
end
end
class ReadGroupSet
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :dataset_id, as: 'datasetId'
property :filename, as: 'filename'
property :id, as: 'id'
hash :info, as: 'info', :class => Array do
include Representable::JSON::Collection
items
end
property :name, as: 'name'
collection :read_groups, as: 'readGroups', class: Google::Apis::GenomicsV1beta2::ReadGroup, decorator: Google::Apis::GenomicsV1beta2::ReadGroup::Representation
property :reference_set_id, as: 'referenceSetId'
end
end
class Reference
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :id, as: 'id'
property :length, as: 'length'
property :md5checksum, as: 'md5checksum'
property :name, as: 'name'
property :ncbi_taxon_id, as: 'ncbiTaxonId'
collection :source_accessions, as: 'sourceAccessions'
property :source_uri, as: 'sourceURI'
end
end
class ReferenceBound
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :reference_name, as: 'referenceName'
property :upper_bound, as: 'upperBound'
end
end
class ReferenceSet
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :assembly_id, as: 'assemblyId'
property :description, as: 'description'
property :id, as: 'id'
property :md5checksum, as: 'md5checksum'
property :ncbi_taxon_id, as: 'ncbiTaxonId'
collection :reference_ids, as: 'referenceIds'
collection :source_accessions, as: 'sourceAccessions'
property :source_uri, as: 'sourceURI'
end
end
class SearchAnnotationSetsRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :dataset_ids, as: 'datasetIds'
property :name, as: 'name'
property :page_size, as: 'pageSize'
property :page_token, as: 'pageToken'
property :reference_set_id, as: 'referenceSetId'
collection :types, as: 'types'
end
end
class SearchAnnotationSetsResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :annotation_sets, as: 'annotationSets', class: Google::Apis::GenomicsV1beta2::AnnotationSet, decorator: Google::Apis::GenomicsV1beta2::AnnotationSet::Representation
property :next_page_token, as: 'nextPageToken'
end
end
class SearchAnnotationsRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :annotation_set_ids, as: 'annotationSetIds'
property :page_size, as: 'pageSize'
property :page_token, as: 'pageToken'
property :range, as: 'range', class: Google::Apis::GenomicsV1beta2::QueryRange, decorator: Google::Apis::GenomicsV1beta2::QueryRange::Representation
end
end
class SearchAnnotationsResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :annotations, as: 'annotations', class: Google::Apis::GenomicsV1beta2::Annotation, decorator: Google::Apis::GenomicsV1beta2::Annotation::Representation
property :next_page_token, as: 'nextPageToken'
end
end
class SearchCallSetsRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :name, as: 'name'
property :page_size, as: 'pageSize'
property :page_token, as: 'pageToken'
collection :variant_set_ids, as: 'variantSetIds'
end
end
class SearchCallSetsResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :call_sets, as: 'callSets', class: Google::Apis::GenomicsV1beta2::CallSet, decorator: Google::Apis::GenomicsV1beta2::CallSet::Representation
property :next_page_token, as: 'nextPageToken'
end
end
class SearchJobsRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :created_after, as: 'createdAfter'
property :created_before, as: 'createdBefore'
property :page_size, as: 'pageSize'
property :page_token, as: 'pageToken'
property :project_number, as: 'projectNumber'
collection :status, as: 'status'
end
end
class SearchJobsResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :jobs, as: 'jobs', class: Google::Apis::GenomicsV1beta2::Job, decorator: Google::Apis::GenomicsV1beta2::Job::Representation
property :next_page_token, as: 'nextPageToken'
end
end
class SearchReadGroupSetsRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :dataset_ids, as: 'datasetIds'
property :name, as: 'name'
property :page_size, as: 'pageSize'
property :page_token, as: 'pageToken'
end
end
class SearchReadGroupSetsResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :next_page_token, as: 'nextPageToken'
collection :read_group_sets, as: 'readGroupSets', class: Google::Apis::GenomicsV1beta2::ReadGroupSet, decorator: Google::Apis::GenomicsV1beta2::ReadGroupSet::Representation
end
end
class SearchReadsRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :end, as: 'end'
property :page_size, as: 'pageSize'
property :page_token, as: 'pageToken'
collection :read_group_ids, as: 'readGroupIds'
collection :read_group_set_ids, as: 'readGroupSetIds'
property :reference_name, as: 'referenceName'
property :start, as: 'start'
end
end
class SearchReadsResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :alignments, as: 'alignments', class: Google::Apis::GenomicsV1beta2::Read, decorator: Google::Apis::GenomicsV1beta2::Read::Representation
property :next_page_token, as: 'nextPageToken'
end
end
class SearchReferenceSetsRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :accessions, as: 'accessions'
property :assembly_id, as: 'assemblyId'
collection :md5checksums, as: 'md5checksums'
property :page_size, as: 'pageSize'
property :page_token, as: 'pageToken'
end
end
class SearchReferenceSetsResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :next_page_token, as: 'nextPageToken'
collection :reference_sets, as: 'referenceSets', class: Google::Apis::GenomicsV1beta2::ReferenceSet, decorator: Google::Apis::GenomicsV1beta2::ReferenceSet::Representation
end
end
class SearchReferencesRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :accessions, as: 'accessions'
collection :md5checksums, as: 'md5checksums'
property :page_size, as: 'pageSize'
property :page_token, as: 'pageToken'
property :reference_set_id, as: 'referenceSetId'
end
end
class SearchReferencesResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :next_page_token, as: 'nextPageToken'
collection :references, as: 'references', class: Google::Apis::GenomicsV1beta2::Reference, decorator: Google::Apis::GenomicsV1beta2::Reference::Representation
end
end
class SearchVariantSetsRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :dataset_ids, as: 'datasetIds'
property :page_size, as: 'pageSize'
property :page_token, as: 'pageToken'
end
end
class SearchVariantSetsResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :next_page_token, as: 'nextPageToken'
collection :variant_sets, as: 'variantSets', class: Google::Apis::GenomicsV1beta2::VariantSet, decorator: Google::Apis::GenomicsV1beta2::VariantSet::Representation
end
end
class SearchVariantsRequest
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :call_set_ids, as: 'callSetIds'
property :end, as: 'end'
property :max_calls, as: 'maxCalls'
property :page_size, as: 'pageSize'
property :page_token, as: 'pageToken'
property :reference_name, as: 'referenceName'
property :start, as: 'start'
property :variant_name, as: 'variantName'
collection :variant_set_ids, as: 'variantSetIds'
end
end
class SearchVariantsResponse
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :next_page_token, as: 'nextPageToken'
collection :variants, as: 'variants', class: Google::Apis::GenomicsV1beta2::Variant, decorator: Google::Apis::GenomicsV1beta2::Variant::Representation
end
end
class Transcript
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :coding_sequence, as: 'codingSequence', class: Google::Apis::GenomicsV1beta2::TranscriptCodingSequence, decorator: Google::Apis::GenomicsV1beta2::TranscriptCodingSequence::Representation
collection :exons, as: 'exons', class: Google::Apis::GenomicsV1beta2::TranscriptExon, decorator: Google::Apis::GenomicsV1beta2::TranscriptExon::Representation
property :gene_id, as: 'geneId'
end
end
class TranscriptCodingSequence
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :end, as: 'end'
property :start, as: 'start'
end
end
class TranscriptExon
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :end, as: 'end'
property :frame, as: 'frame', class: Google::Apis::GenomicsV1beta2::Int32Value, decorator: Google::Apis::GenomicsV1beta2::Int32Value::Representation
property :start, as: 'start'
end
end
class Variant
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
collection :alternate_bases, as: 'alternateBases'
collection :calls, as: 'calls', class: Google::Apis::GenomicsV1beta2::Call, decorator: Google::Apis::GenomicsV1beta2::Call::Representation
property :created, as: 'created'
property :end, as: 'end'
collection :filter, as: 'filter'
property :id, as: 'id'
hash :info, as: 'info', :class => Array do
include Representable::JSON::Collection
items
end
collection :names, as: 'names'
property :quality, as: 'quality'
property :reference_bases, as: 'referenceBases'
property :reference_name, as: 'referenceName'
property :start, as: 'start'
property :variant_set_id, as: 'variantSetId'
end
end
class VariantAnnotation
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :alternate_bases, as: 'alternateBases'
property :clinical_significance, as: 'clinicalSignificance'
collection :conditions, as: 'conditions', class: Google::Apis::GenomicsV1beta2::VariantAnnotationCondition, decorator: Google::Apis::GenomicsV1beta2::VariantAnnotationCondition::Representation
property :effect, as: 'effect'
property :gene_id, as: 'geneId'
collection :transcript_ids, as: 'transcriptIds'
property :type, as: 'type'
end
end
class VariantAnnotationCondition
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :concept_id, as: 'conceptId'
collection :external_ids, as: 'externalIds', class: Google::Apis::GenomicsV1beta2::ExternalId, decorator: Google::Apis::GenomicsV1beta2::ExternalId::Representation
collection :names, as: 'names'
property :omim_id, as: 'omimId'
end
end
class VariantSet
# @private
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class Representation < Google::Apis::Core::JsonRepresentation
property :dataset_id, as: 'datasetId'
property :id, as: 'id'
collection :metadata, as: 'metadata', class: Google::Apis::GenomicsV1beta2::Metadata, decorator: Google::Apis::GenomicsV1beta2::Metadata::Representation
collection :reference_bounds, as: 'referenceBounds', class: Google::Apis::GenomicsV1beta2::ReferenceBound, decorator: Google::Apis::GenomicsV1beta2::ReferenceBound::Representation
end
end
end
end
end