google-api-ruby-client/generated/google/apis/genomics_v2alpha1/classes.rb

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# Copyright 2015 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
require 'date'
require 'google/apis/core/base_service'
require 'google/apis/core/json_representation'
require 'google/apis/core/hashable'
require 'google/apis/errors'
module Google
module Apis
module GenomicsV2alpha1
# Carries information about an accelerator that can be attached to a VM.
class Accelerator
include Google::Apis::Core::Hashable
# How many accelerators of this type to attach.
# Corresponds to the JSON property `count`
# @return [Fixnum]
attr_accessor :count
# The accelerator type string (eg nvidia-tesla-k80).
# Only NVIDIA GPU accelerators are currently supported. If an NVIDIA GPU is
# attached, the required runtime libraries will be made available to all
# containers under `/usr/local/nvidia`. The driver version to install must
# be specified using the NVIDIA driver version parameter on the virtual
# machine specification. Note that attaching a GPU increases the worker VM
# startup time by a few minutes.
# Corresponds to the JSON property `type`
# @return [String]
attr_accessor :type
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@count = args[:count] if args.key?(:count)
@type = args[:type] if args.key?(:type)
end
end
# Action specifies a single action that runs a docker container.
class Action
include Google::Apis::Core::Hashable
# If specified, overrides the CMD specified in the container. If the
# container also has an ENTRYPOINT the values are used as entrypoint
# arguments. Otherwise, they are used as a command and arguments to run
# inside the container.
# Corresponds to the JSON property `commands`
# @return [Array<String>]
attr_accessor :commands
# Secret holds encrypted information that is only decrypted and stored in RAM
# by the worker VM when running the pipeline.
# Corresponds to the JSON property `credentials`
# @return [Google::Apis::GenomicsV2alpha1::Secret]
attr_accessor :credentials
# If specified, overrides the ENTRYPOINT specified in the container.
# Corresponds to the JSON property `entrypoint`
# @return [String]
attr_accessor :entrypoint
# The environment to pass into the container. This environment is merged
# with any values specified in the Pipeline message. These values overwrite
# any in the Pipeline message.
# In addition to the values passed here, a few other values are
# automatically injected into the environment. These cannot be hidden or
# overwritten.
# `GOOGLE_PIPELINE_FAILED` will be set to "1" if the pipeline has failed
# because an action has exited with a non-zero status (and did not have the
# IGNORE_EXIT_STATUS flag set). This can be used to determine if additional
# debug or logging actions should execute.
# `GOOGLE_LAST_EXIT_STATUS` will be set to the exit status of the last
# non-background action that executed. This can be used by workflow engine
# authors to determine whether an individual action has succeeded or failed.
# Corresponds to the JSON property `environment`
# @return [Hash<String,String>]
attr_accessor :environment
# The set of flags to apply to this action.
# Corresponds to the JSON property `flags`
# @return [Array<String>]
attr_accessor :flags
# The URI to pull the container image from. Note that all images referenced
# by actions in the pipeline are pulled before the first action runs. If
# multiple actions reference the same image, it is only pulled once,
# ensuring that the same image is used for all actions in a single pipeline.
# Corresponds to the JSON property `imageUri`
# @return [String]
attr_accessor :image_uri
# Labels to associate with the action. This field is provided to assist
# workflow engine authors in identifying actions (for example, to indicate
# what sort of action they perform: eg. localization, debugging, etc). They
# are returned in the operation metadata but are otherwise ignored.
# Corresponds to the JSON property `labels`
# @return [Hash<String,String>]
attr_accessor :labels
# A list of mounts to make available to the action.
# In addition to the values specified here, every action has a special
# virtual disk mounted under /google that contains log files and other
# operational components.
# <ul>
# <li><code>/google/logs</code>: all logs written during the pipeline
# execution are stored here.</li>
# <li><code>/google/logs/output</code>: the combined standard output and
# standard error of all actions run as part of the pipeline
# execution.</li>
# <li><code>/google/logs/action/*/stdout</code>: the complete contents of
# each individual action's standard output</li>
# <li><code>/google/logs/action/*/stderr</code>: the complete contents of
# each individual action's standard error output</li>
# </ul>
# Corresponds to the JSON property `mounts`
# @return [Array<Google::Apis::GenomicsV2alpha1::Mount>]
attr_accessor :mounts
# An optional name for the container. The container hostname will be set to
# this name, making it useful for inter-container communication. The name
# must contain only upper and lowercase alphanumeric characters and hypens
# and cannot start with a hypen.
# Corresponds to the JSON property `name`
# @return [String]
attr_accessor :name
# The PID namespace to run the action inside. If unspecified, a separate
# isolated namespace is used.
# Corresponds to the JSON property `pidNamespace`
# @return [String]
attr_accessor :pid_namespace
# A map of container to host port mappings for this container. Note that if
# the container already specifies exposed ports, the PUBLISH_EXPOSED_PORTS
# flag should be used instead.
# The host port number must be less than 65536. If it is zero, an unused
# random port is assigned. To determine the resulting port number, consult
# the ContainerStartedEvent in the operation metadata.
# Corresponds to the JSON property `portMappings`
# @return [Hash<String,Fixnum>]
attr_accessor :port_mappings
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@commands = args[:commands] if args.key?(:commands)
@credentials = args[:credentials] if args.key?(:credentials)
@entrypoint = args[:entrypoint] if args.key?(:entrypoint)
@environment = args[:environment] if args.key?(:environment)
@flags = args[:flags] if args.key?(:flags)
@image_uri = args[:image_uri] if args.key?(:image_uri)
@labels = args[:labels] if args.key?(:labels)
@mounts = args[:mounts] if args.key?(:mounts)
@name = args[:name] if args.key?(:name)
@pid_namespace = args[:pid_namespace] if args.key?(:pid_namespace)
@port_mappings = args[:port_mappings] if args.key?(:port_mappings)
end
end
# The request message for Operations.CancelOperation.
class CancelOperationRequest
include Google::Apis::Core::Hashable
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
end
end
# The parameters to the CheckIn method.
class CheckInRequest
include Google::Apis::Core::Hashable
# A generic empty message that you can re-use to avoid defining duplicated
# empty messages in your APIs. A typical example is to use it as the request
# or the response type of an API method. For instance:
# service Foo `
# rpc Bar(google.protobuf.Empty) returns (google.protobuf.Empty);
# `
# The JSON representation for `Empty` is empty JSON object ````.
# Corresponds to the JSON property `deadlineExpired`
# @return [Google::Apis::GenomicsV2alpha1::Empty]
attr_accessor :deadline_expired
# A workflow specific event occurred.
# Corresponds to the JSON property `event`
# @return [Hash<String,Object>]
attr_accessor :event
# The `Status` type defines a logical error model that is suitable for different
# programming environments, including REST APIs and RPC APIs. It is used by
# [gRPC](https://github.com/grpc). The error model is designed to be:
# - Simple to use and understand for most users
# - Flexible enough to meet unexpected needs
# # Overview
# The `Status` message contains three pieces of data: error code, error message,
# and error details. The error code should be an enum value of
# google.rpc.Code, but it may accept additional error codes if needed. The
# error message should be a developer-facing English message that helps
# developers *understand* and *resolve* the error. If a localized user-facing
# error message is needed, put the localized message in the error details or
# localize it in the client. The optional error details may contain arbitrary
# information about the error. There is a predefined set of error detail types
# in the package `google.rpc` that can be used for common error conditions.
# # Language mapping
# The `Status` message is the logical representation of the error model, but it
# is not necessarily the actual wire format. When the `Status` message is
# exposed in different client libraries and different wire protocols, it can be
# mapped differently. For example, it will likely be mapped to some exceptions
# in Java, but more likely mapped to some error codes in C.
# # Other uses
# The error model and the `Status` message can be used in a variety of
# environments, either with or without APIs, to provide a
# consistent developer experience across different environments.
# Example uses of this error model include:
# - Partial errors. If a service needs to return partial errors to the client,
# it may embed the `Status` in the normal response to indicate the partial
# errors.
# - Workflow errors. A typical workflow has multiple steps. Each step may
# have a `Status` message for error reporting.
# - Batch operations. If a client uses batch request and batch response, the
# `Status` message should be used directly inside batch response, one for
# each error sub-response.
# - Asynchronous operations. If an API call embeds asynchronous operation
# results in its response, the status of those operations should be
# represented directly using the `Status` message.
# - Logging. If some API errors are stored in logs, the message `Status` could
# be used directly after any stripping needed for security/privacy reasons.
# Corresponds to the JSON property `result`
# @return [Google::Apis::GenomicsV2alpha1::Status]
attr_accessor :result
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@deadline_expired = args[:deadline_expired] if args.key?(:deadline_expired)
@event = args[:event] if args.key?(:event)
@result = args[:result] if args.key?(:result)
end
end
# The response to the CheckIn method.
class CheckInResponse
include Google::Apis::Core::Hashable
# The deadline by which the worker must request an extension. The backend
# will allow for network transmission time and other delays, but the worker
# must attempt to transmit the extension request no later than the deadline.
# Corresponds to the JSON property `deadline`
# @return [String]
attr_accessor :deadline
# The metadata that describes the operation assigned to the worker.
# Corresponds to the JSON property `metadata`
# @return [Hash<String,Object>]
attr_accessor :metadata
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@deadline = args[:deadline] if args.key?(:deadline)
@metadata = args[:metadata] if args.key?(:metadata)
end
end
# Describes a Compute Engine resource that is being managed by a running
# pipeline.
class ComputeEngine
include Google::Apis::Core::Hashable
# The names of the disks that were created for this pipeline.
# Corresponds to the JSON property `diskNames`
# @return [Array<String>]
attr_accessor :disk_names
# The instance on which the operation is running.
# Corresponds to the JSON property `instanceName`
# @return [String]
attr_accessor :instance_name
# The machine type of the instance.
# Corresponds to the JSON property `machineType`
# @return [String]
attr_accessor :machine_type
# The availability zone in which the instance resides.
# Corresponds to the JSON property `zone`
# @return [String]
attr_accessor :zone
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@disk_names = args[:disk_names] if args.key?(:disk_names)
@instance_name = args[:instance_name] if args.key?(:instance_name)
@machine_type = args[:machine_type] if args.key?(:machine_type)
@zone = args[:zone] if args.key?(:zone)
end
end
# This event is generated when a container starts.
class ContainerStartedEvent
include Google::Apis::Core::Hashable
# The numeric ID of the action that started this container.
# Corresponds to the JSON property `actionId`
# @return [Fixnum]
attr_accessor :action_id
# The public IP address that can be used to connect to the container. This
# field is only populated when at least one port mapping is present. If the
# instance was created with a private address this field will be empty even
# if port mappings exist.
# Corresponds to the JSON property `ipAddress`
# @return [String]
attr_accessor :ip_address
# The container to host port mappings installed for this container. This
# set will contain any ports exposed using the PUBLISH_EXPOSED_PORTS flag as
# well as any specified in the Action definition.
# Corresponds to the JSON property `portMappings`
# @return [Hash<String,Fixnum>]
attr_accessor :port_mappings
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@action_id = args[:action_id] if args.key?(:action_id)
@ip_address = args[:ip_address] if args.key?(:ip_address)
@port_mappings = args[:port_mappings] if args.key?(:port_mappings)
end
end
# This event is generated when a container exits.
class ContainerStoppedEvent
include Google::Apis::Core::Hashable
# The numeric ID of the action that started this container.
# Corresponds to the JSON property `actionId`
# @return [Fixnum]
attr_accessor :action_id
# The exit status of the container.
# Corresponds to the JSON property `exitStatus`
# @return [Fixnum]
attr_accessor :exit_status
# The tail end of any content written to standard error by the container.
# To prevent this from being recorded if the action is known to emit
# large amounts of debugging noise or sensitive information, set the
# DISABLE_STANDARD_ERROR_CAPTURE flag.
# Note that only a small amount of the end of the stream is captured here.
# The entire stream is stored in the /google/logs directory mounted into
# each action, and may be copied off the machine as described elsewhere.
# Corresponds to the JSON property `stderr`
# @return [String]
attr_accessor :stderr
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@action_id = args[:action_id] if args.key?(:action_id)
@exit_status = args[:exit_status] if args.key?(:exit_status)
@stderr = args[:stderr] if args.key?(:stderr)
end
end
# This event is generated whenever a resource limitation or transient error
# delays execution of a pipeline that was otherwise ready to run.
class DelayedEvent
include Google::Apis::Core::Hashable
# A textual description of the cause of the delay. The string may change
# without notice since it is often generated by another service (such as
# Compute Engine).
# Corresponds to the JSON property `cause`
# @return [String]
attr_accessor :cause
# If the delay was caused by a resource shortage, this field lists the
# Compute Engine metrics that are preventing this operation from running
# (for example, CPUS or INSTANCES). If the particular metric is not known,
# a single UNKNOWN metric will be present.
# Corresponds to the JSON property `metrics`
# @return [Array<String>]
attr_accessor :metrics
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@cause = args[:cause] if args.key?(:cause)
@metrics = args[:metrics] if args.key?(:metrics)
end
end
# Carries information about a disk that can be attached to a VM.
class Disk
include Google::Apis::Core::Hashable
# A user supplied name for the disk, used when mounting it into actions.
# The name must contain only upper and lowercase alphanumeric characters and
# hypens and cannot start with a hypen.
# Corresponds to the JSON property `name`
# @return [String]
attr_accessor :name
# The size, in gigabytes, of the disk to attach. Note that this value is
# not configurable for some disk types such as local-ssd. If the size is
# not specified, a size of at least 500gb is used to ensure reasonable I/O
# performance.
# Corresponds to the JSON property `sizeGb`
# @return [Fixnum]
attr_accessor :size_gb
# An optional image to put on the disk before attaching it to the VM.
# Corresponds to the JSON property `sourceImage`
# @return [String]
attr_accessor :source_image
# The Compute Engine disk type. If unspecified, 'standard-pd' is used.
# Corresponds to the JSON property `type`
# @return [String]
attr_accessor :type
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@name = args[:name] if args.key?(:name)
@size_gb = args[:size_gb] if args.key?(:size_gb)
@source_image = args[:source_image] if args.key?(:source_image)
@type = args[:type] if args.key?(:type)
end
end
# A generic empty message that you can re-use to avoid defining duplicated
# empty messages in your APIs. A typical example is to use it as the request
# or the response type of an API method. For instance:
# service Foo `
# rpc Bar(google.protobuf.Empty) returns (google.protobuf.Empty);
# `
# The JSON representation for `Empty` is empty JSON object ````.
class Empty
include Google::Apis::Core::Hashable
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
end
end
# Event carries information about events that occur during pipeline execution.
class Event
include Google::Apis::Core::Hashable
# A human readable description of the event. Note that these strings may
# change at any time without notice. Any application logic must use the
# information in the details field.
# Corresponds to the JSON property `description`
# @return [String]
attr_accessor :description
# Machine readable details about the event.
# Corresponds to the JSON property `details`
# @return [Hash<String,Object>]
attr_accessor :details
# The time that the event occurred.
# Corresponds to the JSON property `timestamp`
# @return [String]
attr_accessor :timestamp
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@description = args[:description] if args.key?(:description)
@details = args[:details] if args.key?(:details)
@timestamp = args[:timestamp] if args.key?(:timestamp)
end
end
# This event is generated when the execution of a pipeline has failed. Note
# that other events may continue to occur after this event.
class FailedEvent
include Google::Apis::Core::Hashable
# The human readable description of the cause of the failure.
# Corresponds to the JSON property `cause`
# @return [String]
attr_accessor :cause
# The Google standard error code that best describes this failure.
# Corresponds to the JSON property `code`
# @return [String]
attr_accessor :code
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@cause = args[:cause] if args.key?(:cause)
@code = args[:code] if args.key?(:code)
end
end
# The read group set import response.
class ImportReadGroupSetsResponse
include Google::Apis::Core::Hashable
# IDs of the read group sets that were created.
# Corresponds to the JSON property `readGroupSetIds`
# @return [Array<String>]
attr_accessor :read_group_set_ids
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@read_group_set_ids = args[:read_group_set_ids] if args.key?(:read_group_set_ids)
end
end
# The variant data import response.
class ImportVariantsResponse
include Google::Apis::Core::Hashable
# IDs of the call sets created during the import.
# Corresponds to the JSON property `callSetIds`
# @return [Array<String>]
attr_accessor :call_set_ids
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@call_set_ids = args[:call_set_ids] if args.key?(:call_set_ids)
end
end
# The response message for Operations.ListOperations.
class ListOperationsResponse
include Google::Apis::Core::Hashable
# The standard List next-page token.
# Corresponds to the JSON property `nextPageToken`
# @return [String]
attr_accessor :next_page_token
# A list of operations that matches the specified filter in the request.
# Corresponds to the JSON property `operations`
# @return [Array<Google::Apis::GenomicsV2alpha1::Operation>]
attr_accessor :operations
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
@operations = args[:operations] if args.key?(:operations)
end
end
# Metadata carries information about the pipeline execution that is returned
# in the long running operation's metadata field.
class Metadata
include Google::Apis::Core::Hashable
# The time that the operation was created by the API.
# Corresponds to the JSON property `createTime`
# @return [String]
attr_accessor :create_time
# The time at which execution was completed and resources were cleaned up.
# Corresponds to the JSON property `endTime`
# @return [String]
attr_accessor :end_time
# The list of events that have happened so far during the execution of this
# operation.
# Corresponds to the JSON property `events`
# @return [Array<Google::Apis::GenomicsV2alpha1::Event>]
attr_accessor :events
# The user defined labels associated with this operation.
# Corresponds to the JSON property `labels`
# @return [Hash<String,String>]
attr_accessor :labels
# The Pipeline object describes a series of actions to execute, expressed as
# docker containers.
# Corresponds to the JSON property `pipeline`
# @return [Google::Apis::GenomicsV2alpha1::Pipeline]
attr_accessor :pipeline
# The first time at which resources were allocated to execute the pipeline.
# Corresponds to the JSON property `startTime`
# @return [String]
attr_accessor :start_time
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@create_time = args[:create_time] if args.key?(:create_time)
@end_time = args[:end_time] if args.key?(:end_time)
@events = args[:events] if args.key?(:events)
@labels = args[:labels] if args.key?(:labels)
@pipeline = args[:pipeline] if args.key?(:pipeline)
@start_time = args[:start_time] if args.key?(:start_time)
end
end
# Mount carries information about a particular disk mount inside a container.
class Mount
include Google::Apis::Core::Hashable
# The name of the disk to mount, as specified in the resources section.
# Corresponds to the JSON property `disk`
# @return [String]
attr_accessor :disk
# The path to mount the disk at inside the container.
# Corresponds to the JSON property `path`
# @return [String]
attr_accessor :path
# If true, the disk is mounted read only inside the container.
# Corresponds to the JSON property `readOnly`
# @return [Boolean]
attr_accessor :read_only
alias_method :read_only?, :read_only
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@disk = args[:disk] if args.key?(:disk)
@path = args[:path] if args.key?(:path)
@read_only = args[:read_only] if args.key?(:read_only)
end
end
# VM networking options.
class Network
include Google::Apis::Core::Hashable
# The network name to attach the VM's network interface to. If unspecified,
# the global default network is used.
# Corresponds to the JSON property `name`
# @return [String]
attr_accessor :name
# If set to true, do not attach a public IP address to the VM. Note that
# without an public IP address, additional configuration is required to
# allow the VM to access Google services.
# See https://cloud.google.com/vpc/docs/configure-private-google-access
# for more information.
# Corresponds to the JSON property `usePrivateAddress`
# @return [Boolean]
attr_accessor :use_private_address
alias_method :use_private_address?, :use_private_address
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@name = args[:name] if args.key?(:name)
@use_private_address = args[:use_private_address] if args.key?(:use_private_address)
end
end
# This resource represents a long-running operation that is the result of a
# network API call.
class Operation
include Google::Apis::Core::Hashable
# If the value is `false`, it means the operation is still in progress.
# If `true`, the operation is completed, and either `error` or `response` is
# available.
# Corresponds to the JSON property `done`
# @return [Boolean]
attr_accessor :done
alias_method :done?, :done
# The `Status` type defines a logical error model that is suitable for different
# programming environments, including REST APIs and RPC APIs. It is used by
# [gRPC](https://github.com/grpc). The error model is designed to be:
# - Simple to use and understand for most users
# - Flexible enough to meet unexpected needs
# # Overview
# The `Status` message contains three pieces of data: error code, error message,
# and error details. The error code should be an enum value of
# google.rpc.Code, but it may accept additional error codes if needed. The
# error message should be a developer-facing English message that helps
# developers *understand* and *resolve* the error. If a localized user-facing
# error message is needed, put the localized message in the error details or
# localize it in the client. The optional error details may contain arbitrary
# information about the error. There is a predefined set of error detail types
# in the package `google.rpc` that can be used for common error conditions.
# # Language mapping
# The `Status` message is the logical representation of the error model, but it
# is not necessarily the actual wire format. When the `Status` message is
# exposed in different client libraries and different wire protocols, it can be
# mapped differently. For example, it will likely be mapped to some exceptions
# in Java, but more likely mapped to some error codes in C.
# # Other uses
# The error model and the `Status` message can be used in a variety of
# environments, either with or without APIs, to provide a
# consistent developer experience across different environments.
# Example uses of this error model include:
# - Partial errors. If a service needs to return partial errors to the client,
# it may embed the `Status` in the normal response to indicate the partial
# errors.
# - Workflow errors. A typical workflow has multiple steps. Each step may
# have a `Status` message for error reporting.
# - Batch operations. If a client uses batch request and batch response, the
# `Status` message should be used directly inside batch response, one for
# each error sub-response.
# - Asynchronous operations. If an API call embeds asynchronous operation
# results in its response, the status of those operations should be
# represented directly using the `Status` message.
# - Logging. If some API errors are stored in logs, the message `Status` could
# be used directly after any stripping needed for security/privacy reasons.
# Corresponds to the JSON property `error`
# @return [Google::Apis::GenomicsV2alpha1::Status]
attr_accessor :error
# An OperationMetadata or Metadata object. This will always be returned with the
# Operation.
# Corresponds to the JSON property `metadata`
# @return [Hash<String,Object>]
attr_accessor :metadata
# The server-assigned name, which is only unique within the same service that
# originally returns it. For example&#58; `operations/CJHU7Oi_ChDrveSpBRjfuL-
# qzoWAgEw`
# Corresponds to the JSON property `name`
# @return [String]
attr_accessor :name
# If importing ReadGroupSets, an ImportReadGroupSetsResponse is returned. If
# importing Variants, an ImportVariantsResponse is returned. For pipelines and
# exports, an Empty response is returned.
# Corresponds to the JSON property `response`
# @return [Hash<String,Object>]
attr_accessor :response
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@done = args[:done] if args.key?(:done)
@error = args[:error] if args.key?(:error)
@metadata = args[:metadata] if args.key?(:metadata)
@name = args[:name] if args.key?(:name)
@response = args[:response] if args.key?(:response)
end
end
# An event that occurred during an Operation.
class OperationEvent
include Google::Apis::Core::Hashable
# Required description of event.
# Corresponds to the JSON property `description`
# @return [String]
attr_accessor :description
# Optional time of when event finished. An event can have a start time and no
# finish time. If an event has a finish time, there must be a start time.
# Corresponds to the JSON property `endTime`
# @return [String]
attr_accessor :end_time
# Optional time of when event started.
# Corresponds to the JSON property `startTime`
# @return [String]
attr_accessor :start_time
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@description = args[:description] if args.key?(:description)
@end_time = args[:end_time] if args.key?(:end_time)
@start_time = args[:start_time] if args.key?(:start_time)
end
end
# Metadata describing an Operation.
class OperationMetadata
include Google::Apis::Core::Hashable
# This field is deprecated. Use `labels` instead. Optionally provided by the
# caller when submitting the request that creates the operation.
# Corresponds to the JSON property `clientId`
# @return [String]
attr_accessor :client_id
# The time at which the job was submitted to the Genomics service.
# Corresponds to the JSON property `createTime`
# @return [String]
attr_accessor :create_time
# The time at which the job stopped running.
# Corresponds to the JSON property `endTime`
# @return [String]
attr_accessor :end_time
# Optional event messages that were generated during the job's execution.
# This also contains any warnings that were generated during import
# or export.
# Corresponds to the JSON property `events`
# @return [Array<Google::Apis::GenomicsV2alpha1::OperationEvent>]
attr_accessor :events
# Optionally provided by the caller when submitting the request that creates
# the operation.
# Corresponds to the JSON property `labels`
# @return [Hash<String,String>]
attr_accessor :labels
# The Google Cloud Project in which the job is scoped.
# Corresponds to the JSON property `projectId`
# @return [String]
attr_accessor :project_id
# The original request that started the operation. Note that this will be in
# current version of the API. If the operation was started with v1beta2 API
# and a GetOperation is performed on v1 API, a v1 request will be returned.
# Corresponds to the JSON property `request`
# @return [Hash<String,Object>]
attr_accessor :request
# Runtime metadata on this Operation.
# Corresponds to the JSON property `runtimeMetadata`
# @return [Hash<String,Object>]
attr_accessor :runtime_metadata
# The time at which the job began to run.
# Corresponds to the JSON property `startTime`
# @return [String]
attr_accessor :start_time
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@client_id = args[:client_id] if args.key?(:client_id)
@create_time = args[:create_time] if args.key?(:create_time)
@end_time = args[:end_time] if args.key?(:end_time)
@events = args[:events] if args.key?(:events)
@labels = args[:labels] if args.key?(:labels)
@project_id = args[:project_id] if args.key?(:project_id)
@request = args[:request] if args.key?(:request)
@runtime_metadata = args[:runtime_metadata] if args.key?(:runtime_metadata)
@start_time = args[:start_time] if args.key?(:start_time)
end
end
# The Pipeline object describes a series of actions to execute, expressed as
# docker containers.
class Pipeline
include Google::Apis::Core::Hashable
# The list of actions to execute, in the order they are specified.
# Corresponds to the JSON property `actions`
# @return [Array<Google::Apis::GenomicsV2alpha1::Action>]
attr_accessor :actions
# The environment to pass into every action. Each action may also specify
# additional environment variables but cannot delete an entry from this map
# (though they may overwrite it with a different value).
# Corresponds to the JSON property `environment`
# @return [Hash<String,String>]
attr_accessor :environment
# The system resources for the pipeline run.
# At least one zone or region must be specified or the pipeline run will fail.
# Corresponds to the JSON property `resources`
# @return [Google::Apis::GenomicsV2alpha1::Resources]
attr_accessor :resources
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@actions = args[:actions] if args.key?(:actions)
@environment = args[:environment] if args.key?(:environment)
@resources = args[:resources] if args.key?(:resources)
end
end
# This event is generated when the worker starts pulling an image.
class PullStartedEvent
include Google::Apis::Core::Hashable
# The URI of the image that was pulled.
# Corresponds to the JSON property `imageUri`
# @return [String]
attr_accessor :image_uri
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@image_uri = args[:image_uri] if args.key?(:image_uri)
end
end
# This event is generated when the worker stops pulling an image.
class PullStoppedEvent
include Google::Apis::Core::Hashable
# The URI of the image that was pulled.
# Corresponds to the JSON property `imageUri`
# @return [String]
attr_accessor :image_uri
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@image_uri = args[:image_uri] if args.key?(:image_uri)
end
end
# The system resources for the pipeline run.
# At least one zone or region must be specified or the pipeline run will fail.
class Resources
include Google::Apis::Core::Hashable
# The customer project ID to allocate resources in.
# Corresponds to the JSON property `projectId`
# @return [String]
attr_accessor :project_id
# The list of regions allowed for VM allocation. If set, the zones field
# must not be set.
# Corresponds to the JSON property `regions`
# @return [Array<String>]
attr_accessor :regions
# Carries information about a Compute Engine VM resource.
# Corresponds to the JSON property `virtualMachine`
# @return [Google::Apis::GenomicsV2alpha1::VirtualMachine]
attr_accessor :virtual_machine
# The list of zones allowed for VM allocation. If set, the regions field
# must not be set.
# Corresponds to the JSON property `zones`
# @return [Array<String>]
attr_accessor :zones
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@project_id = args[:project_id] if args.key?(:project_id)
@regions = args[:regions] if args.key?(:regions)
@virtual_machine = args[:virtual_machine] if args.key?(:virtual_machine)
@zones = args[:zones] if args.key?(:zones)
end
end
# The arguments to the RunPipeline method. The requesting user must have
# the iam.serviceAccounts.actAs permission for the Google Genomics Service
# Account or the request will fail.
class RunPipelineRequest
include Google::Apis::Core::Hashable
# User defined labels to associate with the returned operation. These
# labels are not propagated to any Google Cloud Platform resources used by
# the operation, and may be modified at any time.
# To associate labels with resources created while executing the operation,
# see the appropriate resource message (i.e., VirtualMachine).
# Corresponds to the JSON property `labels`
# @return [Hash<String,String>]
attr_accessor :labels
# The Pipeline object describes a series of actions to execute, expressed as
# docker containers.
# Corresponds to the JSON property `pipeline`
# @return [Google::Apis::GenomicsV2alpha1::Pipeline]
attr_accessor :pipeline
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@labels = args[:labels] if args.key?(:labels)
@pipeline = args[:pipeline] if args.key?(:pipeline)
end
end
# Runtime metadata that will be populated in the
# runtimeMetadata
# field of the Operation associated with a RunPipeline execution.
class RuntimeMetadata
include Google::Apis::Core::Hashable
# Describes a Compute Engine resource that is being managed by a running
# pipeline.
# Corresponds to the JSON property `computeEngine`
# @return [Google::Apis::GenomicsV2alpha1::ComputeEngine]
attr_accessor :compute_engine
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@compute_engine = args[:compute_engine] if args.key?(:compute_engine)
end
end
# Secret holds encrypted information that is only decrypted and stored in RAM
# by the worker VM when running the pipeline.
class Secret
include Google::Apis::Core::Hashable
# The value of the cipherText response from the `encrypt` method.
# Corresponds to the JSON property `cipherText`
# @return [String]
attr_accessor :cipher_text
# The name of the Cloud KMS key that will be used to decrypt the secret
# value. The VM service account must have the required permissions and
# authentication scopes to invoke the `decrypt` method on the specified key.
# Corresponds to the JSON property `keyName`
# @return [String]
attr_accessor :key_name
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@cipher_text = args[:cipher_text] if args.key?(:cipher_text)
@key_name = args[:key_name] if args.key?(:key_name)
end
end
# Carries information about a Google Cloud Service Account.
class ServiceAccount
include Google::Apis::Core::Hashable
# Email address of the service account. If not specified, the default
# compute engine service account for the project will be used.
# Corresponds to the JSON property `email`
# @return [String]
attr_accessor :email
# List of scopes to be enabled for this service account on the VM, in
# addition to the Google Genomics API scope.
# Corresponds to the JSON property `scopes`
# @return [Array<String>]
attr_accessor :scopes
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@email = args[:email] if args.key?(:email)
@scopes = args[:scopes] if args.key?(:scopes)
end
end
# The `Status` type defines a logical error model that is suitable for different
# programming environments, including REST APIs and RPC APIs. It is used by
# [gRPC](https://github.com/grpc). The error model is designed to be:
# - Simple to use and understand for most users
# - Flexible enough to meet unexpected needs
# # Overview
# The `Status` message contains three pieces of data: error code, error message,
# and error details. The error code should be an enum value of
# google.rpc.Code, but it may accept additional error codes if needed. The
# error message should be a developer-facing English message that helps
# developers *understand* and *resolve* the error. If a localized user-facing
# error message is needed, put the localized message in the error details or
# localize it in the client. The optional error details may contain arbitrary
# information about the error. There is a predefined set of error detail types
# in the package `google.rpc` that can be used for common error conditions.
# # Language mapping
# The `Status` message is the logical representation of the error model, but it
# is not necessarily the actual wire format. When the `Status` message is
# exposed in different client libraries and different wire protocols, it can be
# mapped differently. For example, it will likely be mapped to some exceptions
# in Java, but more likely mapped to some error codes in C.
# # Other uses
# The error model and the `Status` message can be used in a variety of
# environments, either with or without APIs, to provide a
# consistent developer experience across different environments.
# Example uses of this error model include:
# - Partial errors. If a service needs to return partial errors to the client,
# it may embed the `Status` in the normal response to indicate the partial
# errors.
# - Workflow errors. A typical workflow has multiple steps. Each step may
# have a `Status` message for error reporting.
# - Batch operations. If a client uses batch request and batch response, the
# `Status` message should be used directly inside batch response, one for
# each error sub-response.
# - Asynchronous operations. If an API call embeds asynchronous operation
# results in its response, the status of those operations should be
# represented directly using the `Status` message.
# - Logging. If some API errors are stored in logs, the message `Status` could
# be used directly after any stripping needed for security/privacy reasons.
class Status
include Google::Apis::Core::Hashable
# The status code, which should be an enum value of google.rpc.Code.
# Corresponds to the JSON property `code`
# @return [Fixnum]
attr_accessor :code
# A list of messages that carry the error details. There is a common set of
# message types for APIs to use.
# Corresponds to the JSON property `details`
# @return [Array<Hash<String,Object>>]
attr_accessor :details
# A developer-facing error message, which should be in English. Any
# user-facing error message should be localized and sent in the
# google.rpc.Status.details field, or localized by the client.
# Corresponds to the JSON property `message`
# @return [String]
attr_accessor :message
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@code = args[:code] if args.key?(:code)
@details = args[:details] if args.key?(:details)
@message = args[:message] if args.key?(:message)
end
end
# This event is generated when the execution of a container results in a
# non-zero exit status that was not otherwise ignored. Execution will
# continue, but only actions that are flagged as ALWAYS_RUN will be executed:
# other actions will be skipped.
class UnexpectedExitStatusEvent
include Google::Apis::Core::Hashable
# The numeric ID of the action that started the container.
# Corresponds to the JSON property `actionId`
# @return [Fixnum]
attr_accessor :action_id
# The exit status of the container.
# Corresponds to the JSON property `exitStatus`
# @return [Fixnum]
attr_accessor :exit_status
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@action_id = args[:action_id] if args.key?(:action_id)
@exit_status = args[:exit_status] if args.key?(:exit_status)
end
end
# Carries information about a Compute Engine VM resource.
class VirtualMachine
include Google::Apis::Core::Hashable
# The list of accelerators to attach to the VM.
# Corresponds to the JSON property `accelerators`
# @return [Array<Google::Apis::GenomicsV2alpha1::Accelerator>]
attr_accessor :accelerators
# The size of the boot disk, in gigabytes. The boot disk must be large
# enough to accommodate all of the docker images from each action in the
# pipeline at the same time. If not specified, a small but reasonable
# default value is used.
# Corresponds to the JSON property `bootDiskSizeGb`
# @return [Fixnum]
attr_accessor :boot_disk_size_gb
# The host operating system image to use.
# At present, only Container Optimized OS images may be used.
# The default value is "projects/cos-cloud/global/images/family/cos-stable"
# which selects the latest stable release of Container Optimized OS.
# This option is provided to allow testing against the beta release of the
# operating system to ensure that the new version does not interact
# negatively with production pipelines.
# To test a pipeline against the beta release of COS, use the value
# "projects/cos-cloud/global/images/family/cos-beta".
# Corresponds to the JSON property `bootImage`
# @return [String]
attr_accessor :boot_image
# The CPU platform to request. An instance based on a newer platform may be
# allocated but never one with less capabilities. The value of this
# parameter must be a valid Compute Engine CPU platform name (such as "Intel
# Skylake"). This parameter is only useful for carefully optimized work
# loads where the CPU platform has a significant impact.
# For more information about the effect of this parameter, please visit
# https://cloud.google.com/compute/docs/instances/specify-min-cpu-platform.
# Corresponds to the JSON property `cpuPlatform`
# @return [String]
attr_accessor :cpu_platform
# The list of disks to create and attach to the VM.
# Corresponds to the JSON property `disks`
# @return [Array<Google::Apis::GenomicsV2alpha1::Disk>]
attr_accessor :disks
# Optional set of labels to apply to the VM and any attached disk resources.
# These labels must adhere to the name and value restrictions on VM labels
# imposed by Compute Engine.
# These labels are applied at creation time to the VM and are applied on a
# best-effort basis to attached disk resources shortly after VM creation.
# Corresponds to the JSON property `labels`
# @return [Hash<String,String>]
attr_accessor :labels
# The machine type of the virtual machine to create. Must be the short name
# of a standard machine type (such as "n1-standard-1") or a custom machine
# type (such as "custom-1-4096").
# Corresponds to the JSON property `machineType`
# @return [String]
attr_accessor :machine_type
# VM networking options.
# Corresponds to the JSON property `network`
# @return [Google::Apis::GenomicsV2alpha1::Network]
attr_accessor :network
# The NVIDIA driver version to use when attaching an NVIDIA GPU accelerator.
# The version specified here must be compatible with the GPU libraries
# contained in the container being executed, and must be one of the drivers
# hosted in the 'nvidia-drivers-us-public' bucket on Google Cloud Storage.
# Corresponds to the JSON property `nvidiaDriverVersion`
# @return [String]
attr_accessor :nvidia_driver_version
# If true, allocate a preemptible VM.
# Corresponds to the JSON property `preemptible`
# @return [Boolean]
attr_accessor :preemptible
alias_method :preemptible?, :preemptible
# Carries information about a Google Cloud Service Account.
# Corresponds to the JSON property `serviceAccount`
# @return [Google::Apis::GenomicsV2alpha1::ServiceAccount]
attr_accessor :service_account
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@accelerators = args[:accelerators] if args.key?(:accelerators)
@boot_disk_size_gb = args[:boot_disk_size_gb] if args.key?(:boot_disk_size_gb)
@boot_image = args[:boot_image] if args.key?(:boot_image)
@cpu_platform = args[:cpu_platform] if args.key?(:cpu_platform)
@disks = args[:disks] if args.key?(:disks)
@labels = args[:labels] if args.key?(:labels)
@machine_type = args[:machine_type] if args.key?(:machine_type)
@network = args[:network] if args.key?(:network)
@nvidia_driver_version = args[:nvidia_driver_version] if args.key?(:nvidia_driver_version)
@preemptible = args[:preemptible] if args.key?(:preemptible)
@service_account = args[:service_account] if args.key?(:service_account)
end
end
# This event is generated once a worker VM has been assigned to run the
# pipeline.
class WorkerAssignedEvent
include Google::Apis::Core::Hashable
# The worker's instance name.
# Corresponds to the JSON property `instance`
# @return [String]
attr_accessor :instance
# The zone the worker is running in.
# Corresponds to the JSON property `zone`
# @return [String]
attr_accessor :zone
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@instance = args[:instance] if args.key?(:instance)
@zone = args[:zone] if args.key?(:zone)
end
end
# This event is generated when the worker VM that was assigned to the pipeline
# has been released (i.e., deleted).
class WorkerReleasedEvent
include Google::Apis::Core::Hashable
# The worker's instance name.
# Corresponds to the JSON property `instance`
# @return [String]
attr_accessor :instance
# The zone the worker was running in.
# Corresponds to the JSON property `zone`
# @return [String]
attr_accessor :zone
def initialize(**args)
update!(**args)
end
# Update properties of this object
def update!(**args)
@instance = args[:instance] if args.key?(:instance)
@zone = args[:zone] if args.key?(:zone)
end
end
end
end
end