765 lines
29 KiB
Ruby
765 lines
29 KiB
Ruby
# Copyright 2015 Google Inc.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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require 'date'
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require 'google/apis/core/base_service'
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require 'google/apis/core/json_representation'
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require 'google/apis/core/hashable'
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require 'google/apis/errors'
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module Google
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module Apis
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module GenomicsV1
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# The request message for Operations.CancelOperation.
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class CancelOperationRequest
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include Google::Apis::Core::Hashable
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def initialize(**args)
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update!(**args)
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end
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# Update properties of this object
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def update!(**args)
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end
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end
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# Describes a Compute Engine resource that is being managed by a running
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# pipeline.
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class ComputeEngine
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include Google::Apis::Core::Hashable
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# The names of the disks that were created for this pipeline.
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# Corresponds to the JSON property `diskNames`
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# @return [Array<String>]
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attr_accessor :disk_names
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# The instance on which the operation is running.
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# Corresponds to the JSON property `instanceName`
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# @return [String]
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attr_accessor :instance_name
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# The machine type of the instance.
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# Corresponds to the JSON property `machineType`
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# @return [String]
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attr_accessor :machine_type
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# The availability zone in which the instance resides.
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# Corresponds to the JSON property `zone`
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# @return [String]
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attr_accessor :zone
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def initialize(**args)
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update!(**args)
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end
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# Update properties of this object
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def update!(**args)
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@disk_names = args[:disk_names] if args.key?(:disk_names)
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@instance_name = args[:instance_name] if args.key?(:instance_name)
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@machine_type = args[:machine_type] if args.key?(:machine_type)
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@zone = args[:zone] if args.key?(:zone)
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end
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end
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# An event generated when a container is forcibly terminated by the
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# worker. Currently, this only occurs when the container outlives the
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# timeout specified by the user.
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class ContainerKilledEvent
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include Google::Apis::Core::Hashable
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# The numeric ID of the action that started the container.
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# Corresponds to the JSON property `actionId`
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# @return [Fixnum]
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attr_accessor :action_id
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def initialize(**args)
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update!(**args)
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end
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# Update properties of this object
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def update!(**args)
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@action_id = args[:action_id] if args.key?(:action_id)
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end
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end
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# An event generated when a container starts.
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class ContainerStartedEvent
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include Google::Apis::Core::Hashable
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# The numeric ID of the action that started this container.
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# Corresponds to the JSON property `actionId`
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# @return [Fixnum]
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attr_accessor :action_id
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# The public IP address that can be used to connect to the container. This
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# field is only populated when at least one port mapping is present. If the
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# instance was created with a private address, this field will be empty even
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# if port mappings exist.
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# Corresponds to the JSON property `ipAddress`
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# @return [String]
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attr_accessor :ip_address
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# The container-to-host port mappings installed for this container. This
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# set will contain any ports exposed using the `PUBLISH_EXPOSED_PORTS` flag
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# as well as any specified in the `Action` definition.
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# Corresponds to the JSON property `portMappings`
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# @return [Hash<String,Fixnum>]
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attr_accessor :port_mappings
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def initialize(**args)
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update!(**args)
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end
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# Update properties of this object
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def update!(**args)
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@action_id = args[:action_id] if args.key?(:action_id)
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@ip_address = args[:ip_address] if args.key?(:ip_address)
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@port_mappings = args[:port_mappings] if args.key?(:port_mappings)
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end
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end
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# An event generated when a container exits.
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class ContainerStoppedEvent
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include Google::Apis::Core::Hashable
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# The numeric ID of the action that started this container.
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# Corresponds to the JSON property `actionId`
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# @return [Fixnum]
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attr_accessor :action_id
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# The exit status of the container.
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# Corresponds to the JSON property `exitStatus`
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# @return [Fixnum]
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attr_accessor :exit_status
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# The tail end of any content written to standard error by the container.
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# If the content emits large amounts of debugging noise or contains
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# sensitive information, you can prevent the content from being printed by
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# setting the `DISABLE_STANDARD_ERROR_CAPTURE` flag.
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# Note that only a small amount of the end of the stream is captured here.
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# The entire stream is stored in the `/google/logs` directory mounted into
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# each action, and can be copied off the machine as described elsewhere.
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# Corresponds to the JSON property `stderr`
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# @return [String]
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attr_accessor :stderr
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def initialize(**args)
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update!(**args)
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end
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# Update properties of this object
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def update!(**args)
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@action_id = args[:action_id] if args.key?(:action_id)
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@exit_status = args[:exit_status] if args.key?(:exit_status)
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@stderr = args[:stderr] if args.key?(:stderr)
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end
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end
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# An event generated whenever a resource limitation or transient error
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# delays execution of a pipeline that was otherwise ready to run.
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class DelayedEvent
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include Google::Apis::Core::Hashable
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# A textual description of the cause of the delay. The string can change
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# without notice because it is often generated by another service (such as
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# Compute Engine).
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# Corresponds to the JSON property `cause`
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# @return [String]
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attr_accessor :cause
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# If the delay was caused by a resource shortage, this field lists the
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# Compute Engine metrics that are preventing this operation from running
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# (for example, `CPUS` or `INSTANCES`). If the particular metric is not
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# known, a single `UNKNOWN` metric will be present.
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# Corresponds to the JSON property `metrics`
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# @return [Array<String>]
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attr_accessor :metrics
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def initialize(**args)
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update!(**args)
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end
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# Update properties of this object
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def update!(**args)
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@cause = args[:cause] if args.key?(:cause)
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@metrics = args[:metrics] if args.key?(:metrics)
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end
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end
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# A generic empty message that you can re-use to avoid defining duplicated
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# empty messages in your APIs. A typical example is to use it as the request
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# or the response type of an API method. For instance:
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# service Foo `
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# rpc Bar(google.protobuf.Empty) returns (google.protobuf.Empty);
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# `
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# The JSON representation for `Empty` is empty JSON object ````.
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class Empty
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include Google::Apis::Core::Hashable
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def initialize(**args)
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update!(**args)
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end
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# Update properties of this object
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def update!(**args)
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end
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end
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# Carries information about events that occur during pipeline execution.
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class Event
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include Google::Apis::Core::Hashable
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# A human-readable description of the event. Note that these strings can
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# change at any time without notice. Any application logic must use the
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# information in the `details` field.
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# Corresponds to the JSON property `description`
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# @return [String]
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attr_accessor :description
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# Machine-readable details about the event.
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# Corresponds to the JSON property `details`
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# @return [Hash<String,Object>]
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attr_accessor :details
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# The time at which the event occurred.
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# Corresponds to the JSON property `timestamp`
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# @return [String]
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attr_accessor :timestamp
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def initialize(**args)
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update!(**args)
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end
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# Update properties of this object
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def update!(**args)
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@description = args[:description] if args.key?(:description)
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@details = args[:details] if args.key?(:details)
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@timestamp = args[:timestamp] if args.key?(:timestamp)
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end
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end
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# An event generated when the execution of a pipeline has failed. Note
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# that other events can continue to occur after this event.
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class FailedEvent
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include Google::Apis::Core::Hashable
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# The human-readable description of the cause of the failure.
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# Corresponds to the JSON property `cause`
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# @return [String]
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attr_accessor :cause
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# The Google standard error code that best describes this failure.
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# Corresponds to the JSON property `code`
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# @return [String]
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attr_accessor :code
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def initialize(**args)
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update!(**args)
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end
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# Update properties of this object
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def update!(**args)
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@cause = args[:cause] if args.key?(:cause)
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@code = args[:code] if args.key?(:code)
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end
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end
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# The read group set import response.
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class ImportReadGroupSetsResponse
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include Google::Apis::Core::Hashable
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# IDs of the read group sets that were created.
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# Corresponds to the JSON property `readGroupSetIds`
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# @return [Array<String>]
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attr_accessor :read_group_set_ids
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def initialize(**args)
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update!(**args)
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end
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# Update properties of this object
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def update!(**args)
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@read_group_set_ids = args[:read_group_set_ids] if args.key?(:read_group_set_ids)
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end
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end
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# The variant data import response.
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class ImportVariantsResponse
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include Google::Apis::Core::Hashable
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# IDs of the call sets created during the import.
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# Corresponds to the JSON property `callSetIds`
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# @return [Array<String>]
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attr_accessor :call_set_ids
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def initialize(**args)
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update!(**args)
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end
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# Update properties of this object
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def update!(**args)
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@call_set_ids = args[:call_set_ids] if args.key?(:call_set_ids)
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end
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end
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# The response message for Operations.ListOperations.
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class ListOperationsResponse
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include Google::Apis::Core::Hashable
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# The standard List next-page token.
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# Corresponds to the JSON property `nextPageToken`
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# @return [String]
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attr_accessor :next_page_token
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# A list of operations that matches the specified filter in the request.
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# Corresponds to the JSON property `operations`
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# @return [Array<Google::Apis::GenomicsV1::Operation>]
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attr_accessor :operations
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def initialize(**args)
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update!(**args)
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end
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# Update properties of this object
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def update!(**args)
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@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
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@operations = args[:operations] if args.key?(:operations)
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end
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end
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# This resource represents a long-running operation that is the result of a
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# network API call.
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class Operation
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include Google::Apis::Core::Hashable
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# If the value is `false`, it means the operation is still in progress.
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# If `true`, the operation is completed, and either `error` or `response` is
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# available.
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# Corresponds to the JSON property `done`
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# @return [Boolean]
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attr_accessor :done
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alias_method :done?, :done
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# The `Status` type defines a logical error model that is suitable for
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# different programming environments, including REST APIs and RPC APIs. It is
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# used by [gRPC](https://github.com/grpc). The error model is designed to be:
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# - Simple to use and understand for most users
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# - Flexible enough to meet unexpected needs
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# # Overview
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# The `Status` message contains three pieces of data: error code, error
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# message, and error details. The error code should be an enum value of
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# google.rpc.Code, but it may accept additional error codes if needed. The
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# error message should be a developer-facing English message that helps
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# developers *understand* and *resolve* the error. If a localized user-facing
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# error message is needed, put the localized message in the error details or
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# localize it in the client. The optional error details may contain arbitrary
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# information about the error. There is a predefined set of error detail types
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# in the package `google.rpc` that can be used for common error conditions.
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# # Language mapping
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# The `Status` message is the logical representation of the error model, but it
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# is not necessarily the actual wire format. When the `Status` message is
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# exposed in different client libraries and different wire protocols, it can be
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# mapped differently. For example, it will likely be mapped to some exceptions
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# in Java, but more likely mapped to some error codes in C.
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# # Other uses
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# The error model and the `Status` message can be used in a variety of
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# environments, either with or without APIs, to provide a
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# consistent developer experience across different environments.
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# Example uses of this error model include:
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# - Partial errors. If a service needs to return partial errors to the client,
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# it may embed the `Status` in the normal response to indicate the partial
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# errors.
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# - Workflow errors. A typical workflow has multiple steps. Each step may
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# have a `Status` message for error reporting.
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# - Batch operations. If a client uses batch request and batch response, the
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# `Status` message should be used directly inside batch response, one for
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# each error sub-response.
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# - Asynchronous operations. If an API call embeds asynchronous operation
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# results in its response, the status of those operations should be
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# represented directly using the `Status` message.
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# - Logging. If some API errors are stored in logs, the message `Status` could
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# be used directly after any stripping needed for security/privacy reasons.
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# Corresponds to the JSON property `error`
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# @return [Google::Apis::GenomicsV1::Status]
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attr_accessor :error
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# An OperationMetadata or Metadata object. This will always be returned with the
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# Operation.
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# Corresponds to the JSON property `metadata`
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# @return [Hash<String,Object>]
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attr_accessor :metadata
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# The server-assigned name, which is only unique within the same service that
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# originally returns it. For example: `operations/CJHU7Oi_ChDrveSpBRjfuL-
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# qzoWAgEw`
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# Corresponds to the JSON property `name`
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# @return [String]
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attr_accessor :name
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# If importing ReadGroupSets, an ImportReadGroupSetsResponse is returned. If
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# importing Variants, an ImportVariantsResponse is returned. For pipelines and
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# exports, an Empty response is returned.
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# Corresponds to the JSON property `response`
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# @return [Hash<String,Object>]
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attr_accessor :response
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def initialize(**args)
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update!(**args)
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end
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# Update properties of this object
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def update!(**args)
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@done = args[:done] if args.key?(:done)
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@error = args[:error] if args.key?(:error)
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@metadata = args[:metadata] if args.key?(:metadata)
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@name = args[:name] if args.key?(:name)
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@response = args[:response] if args.key?(:response)
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end
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end
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# An event that occurred during an Operation.
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class OperationEvent
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include Google::Apis::Core::Hashable
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# Required description of event.
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# Corresponds to the JSON property `description`
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# @return [String]
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attr_accessor :description
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# Optional time of when event finished. An event can have a start time and no
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# finish time. If an event has a finish time, there must be a start time.
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# Corresponds to the JSON property `endTime`
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# @return [String]
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attr_accessor :end_time
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# Optional time of when event started.
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# Corresponds to the JSON property `startTime`
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# @return [String]
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attr_accessor :start_time
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def initialize(**args)
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update!(**args)
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end
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# Update properties of this object
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def update!(**args)
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@description = args[:description] if args.key?(:description)
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@end_time = args[:end_time] if args.key?(:end_time)
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@start_time = args[:start_time] if args.key?(:start_time)
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end
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end
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# Metadata describing an Operation.
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class OperationMetadata
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include Google::Apis::Core::Hashable
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# This field is deprecated. Use `labels` instead. Optionally provided by the
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# caller when submitting the request that creates the operation.
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# Corresponds to the JSON property `clientId`
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# @return [String]
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attr_accessor :client_id
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# The time at which the job was submitted to the Genomics service.
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# Corresponds to the JSON property `createTime`
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# @return [String]
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attr_accessor :create_time
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# The time at which the job stopped running.
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# Corresponds to the JSON property `endTime`
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# @return [String]
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attr_accessor :end_time
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# Optional event messages that were generated during the job's execution.
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# This also contains any warnings that were generated during import
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# or export.
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# Corresponds to the JSON property `events`
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# @return [Array<Google::Apis::GenomicsV1::OperationEvent>]
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attr_accessor :events
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# Optionally provided by the caller when submitting the request that creates
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# the operation.
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# Corresponds to the JSON property `labels`
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# @return [Hash<String,String>]
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attr_accessor :labels
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# The Google Cloud Project in which the job is scoped.
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# Corresponds to the JSON property `projectId`
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# @return [String]
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attr_accessor :project_id
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# The original request that started the operation. Note that this will be in
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# current version of the API. If the operation was started with v1beta2 API
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# and a GetOperation is performed on v1 API, a v1 request will be returned.
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# Corresponds to the JSON property `request`
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# @return [Hash<String,Object>]
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attr_accessor :request
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# Runtime metadata on this Operation.
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# Corresponds to the JSON property `runtimeMetadata`
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# @return [Hash<String,Object>]
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attr_accessor :runtime_metadata
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# The time at which the job began to run.
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# Corresponds to the JSON property `startTime`
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# @return [String]
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attr_accessor :start_time
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def initialize(**args)
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update!(**args)
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end
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# Update properties of this object
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def update!(**args)
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@client_id = args[:client_id] if args.key?(:client_id)
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@create_time = args[:create_time] if args.key?(:create_time)
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@end_time = args[:end_time] if args.key?(:end_time)
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@events = args[:events] if args.key?(:events)
|
|
@labels = args[:labels] if args.key?(:labels)
|
|
@project_id = args[:project_id] if args.key?(:project_id)
|
|
@request = args[:request] if args.key?(:request)
|
|
@runtime_metadata = args[:runtime_metadata] if args.key?(:runtime_metadata)
|
|
@start_time = args[:start_time] if args.key?(:start_time)
|
|
end
|
|
end
|
|
|
|
# An event generated when the worker starts pulling an image.
|
|
class PullStartedEvent
|
|
include Google::Apis::Core::Hashable
|
|
|
|
# The URI of the image that was pulled.
|
|
# Corresponds to the JSON property `imageUri`
|
|
# @return [String]
|
|
attr_accessor :image_uri
|
|
|
|
def initialize(**args)
|
|
update!(**args)
|
|
end
|
|
|
|
# Update properties of this object
|
|
def update!(**args)
|
|
@image_uri = args[:image_uri] if args.key?(:image_uri)
|
|
end
|
|
end
|
|
|
|
# An event generated when the worker stops pulling an image.
|
|
class PullStoppedEvent
|
|
include Google::Apis::Core::Hashable
|
|
|
|
# The URI of the image that was pulled.
|
|
# Corresponds to the JSON property `imageUri`
|
|
# @return [String]
|
|
attr_accessor :image_uri
|
|
|
|
def initialize(**args)
|
|
update!(**args)
|
|
end
|
|
|
|
# Update properties of this object
|
|
def update!(**args)
|
|
@image_uri = args[:image_uri] if args.key?(:image_uri)
|
|
end
|
|
end
|
|
|
|
# The response to the RunPipeline method, returned in the operation's result
|
|
# field on success.
|
|
class RunPipelineResponse
|
|
include Google::Apis::Core::Hashable
|
|
|
|
def initialize(**args)
|
|
update!(**args)
|
|
end
|
|
|
|
# Update properties of this object
|
|
def update!(**args)
|
|
end
|
|
end
|
|
|
|
# Runtime metadata that will be populated in the
|
|
# runtimeMetadata
|
|
# field of the Operation associated with a RunPipeline execution.
|
|
class RuntimeMetadata
|
|
include Google::Apis::Core::Hashable
|
|
|
|
# Describes a Compute Engine resource that is being managed by a running
|
|
# pipeline.
|
|
# Corresponds to the JSON property `computeEngine`
|
|
# @return [Google::Apis::GenomicsV1::ComputeEngine]
|
|
attr_accessor :compute_engine
|
|
|
|
def initialize(**args)
|
|
update!(**args)
|
|
end
|
|
|
|
# Update properties of this object
|
|
def update!(**args)
|
|
@compute_engine = args[:compute_engine] if args.key?(:compute_engine)
|
|
end
|
|
end
|
|
|
|
# The `Status` type defines a logical error model that is suitable for
|
|
# different programming environments, including REST APIs and RPC APIs. It is
|
|
# used by [gRPC](https://github.com/grpc). The error model is designed to be:
|
|
# - Simple to use and understand for most users
|
|
# - Flexible enough to meet unexpected needs
|
|
# # Overview
|
|
# The `Status` message contains three pieces of data: error code, error
|
|
# message, and error details. The error code should be an enum value of
|
|
# google.rpc.Code, but it may accept additional error codes if needed. The
|
|
# error message should be a developer-facing English message that helps
|
|
# developers *understand* and *resolve* the error. If a localized user-facing
|
|
# error message is needed, put the localized message in the error details or
|
|
# localize it in the client. The optional error details may contain arbitrary
|
|
# information about the error. There is a predefined set of error detail types
|
|
# in the package `google.rpc` that can be used for common error conditions.
|
|
# # Language mapping
|
|
# The `Status` message is the logical representation of the error model, but it
|
|
# is not necessarily the actual wire format. When the `Status` message is
|
|
# exposed in different client libraries and different wire protocols, it can be
|
|
# mapped differently. For example, it will likely be mapped to some exceptions
|
|
# in Java, but more likely mapped to some error codes in C.
|
|
# # Other uses
|
|
# The error model and the `Status` message can be used in a variety of
|
|
# environments, either with or without APIs, to provide a
|
|
# consistent developer experience across different environments.
|
|
# Example uses of this error model include:
|
|
# - Partial errors. If a service needs to return partial errors to the client,
|
|
# it may embed the `Status` in the normal response to indicate the partial
|
|
# errors.
|
|
# - Workflow errors. A typical workflow has multiple steps. Each step may
|
|
# have a `Status` message for error reporting.
|
|
# - Batch operations. If a client uses batch request and batch response, the
|
|
# `Status` message should be used directly inside batch response, one for
|
|
# each error sub-response.
|
|
# - Asynchronous operations. If an API call embeds asynchronous operation
|
|
# results in its response, the status of those operations should be
|
|
# represented directly using the `Status` message.
|
|
# - Logging. If some API errors are stored in logs, the message `Status` could
|
|
# be used directly after any stripping needed for security/privacy reasons.
|
|
class Status
|
|
include Google::Apis::Core::Hashable
|
|
|
|
# The status code, which should be an enum value of google.rpc.Code.
|
|
# Corresponds to the JSON property `code`
|
|
# @return [Fixnum]
|
|
attr_accessor :code
|
|
|
|
# A list of messages that carry the error details. There is a common set of
|
|
# message types for APIs to use.
|
|
# Corresponds to the JSON property `details`
|
|
# @return [Array<Hash<String,Object>>]
|
|
attr_accessor :details
|
|
|
|
# A developer-facing error message, which should be in English. Any
|
|
# user-facing error message should be localized and sent in the
|
|
# google.rpc.Status.details field, or localized by the client.
|
|
# Corresponds to the JSON property `message`
|
|
# @return [String]
|
|
attr_accessor :message
|
|
|
|
def initialize(**args)
|
|
update!(**args)
|
|
end
|
|
|
|
# Update properties of this object
|
|
def update!(**args)
|
|
@code = args[:code] if args.key?(:code)
|
|
@details = args[:details] if args.key?(:details)
|
|
@message = args[:message] if args.key?(:message)
|
|
end
|
|
end
|
|
|
|
# An event generated when the execution of a container results in a
|
|
# non-zero exit status that was not otherwise ignored. Execution will
|
|
# continue, but only actions that are flagged as `ALWAYS_RUN` will be
|
|
# executed. Other actions will be skipped.
|
|
class UnexpectedExitStatusEvent
|
|
include Google::Apis::Core::Hashable
|
|
|
|
# The numeric ID of the action that started the container.
|
|
# Corresponds to the JSON property `actionId`
|
|
# @return [Fixnum]
|
|
attr_accessor :action_id
|
|
|
|
# The exit status of the container.
|
|
# Corresponds to the JSON property `exitStatus`
|
|
# @return [Fixnum]
|
|
attr_accessor :exit_status
|
|
|
|
def initialize(**args)
|
|
update!(**args)
|
|
end
|
|
|
|
# Update properties of this object
|
|
def update!(**args)
|
|
@action_id = args[:action_id] if args.key?(:action_id)
|
|
@exit_status = args[:exit_status] if args.key?(:exit_status)
|
|
end
|
|
end
|
|
|
|
# An event generated after a worker VM has been assigned to run the
|
|
# pipeline.
|
|
class WorkerAssignedEvent
|
|
include Google::Apis::Core::Hashable
|
|
|
|
# The worker's instance name.
|
|
# Corresponds to the JSON property `instance`
|
|
# @return [String]
|
|
attr_accessor :instance
|
|
|
|
# The zone the worker is running in.
|
|
# Corresponds to the JSON property `zone`
|
|
# @return [String]
|
|
attr_accessor :zone
|
|
|
|
def initialize(**args)
|
|
update!(**args)
|
|
end
|
|
|
|
# Update properties of this object
|
|
def update!(**args)
|
|
@instance = args[:instance] if args.key?(:instance)
|
|
@zone = args[:zone] if args.key?(:zone)
|
|
end
|
|
end
|
|
|
|
# An event generated when the worker VM that was assigned to the pipeline
|
|
# has been released (deleted).
|
|
class WorkerReleasedEvent
|
|
include Google::Apis::Core::Hashable
|
|
|
|
# The worker's instance name.
|
|
# Corresponds to the JSON property `instance`
|
|
# @return [String]
|
|
attr_accessor :instance
|
|
|
|
# The zone the worker was running in.
|
|
# Corresponds to the JSON property `zone`
|
|
# @return [String]
|
|
attr_accessor :zone
|
|
|
|
def initialize(**args)
|
|
update!(**args)
|
|
end
|
|
|
|
# Update properties of this object
|
|
def update!(**args)
|
|
@instance = args[:instance] if args.key?(:instance)
|
|
@zone = args[:zone] if args.key?(:zone)
|
|
end
|
|
end
|
|
end
|
|
end
|
|
end
|