google-api-ruby-client/generated/google-apis-genomics_v2alpha1/lib/google/apis/genomics_v2alpha1/service.rb

# Copyright 2020 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#      http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

require 'google/apis/core/base_service'
require 'google/apis/core/json_representation'
require 'google/apis/core/hashable'
require 'google/apis/errors'

module Google
  module Apis
    module GenomicsV2alpha1
      # Genomics API
      #
      # Uploads, processes, queries, and searches Genomics data in the cloud.
      #
      # @example
      #    require 'google/apis/genomics_v2alpha1'
      #
      #    Genomics = Google::Apis::GenomicsV2alpha1 # Alias the module
      #    service = Genomics::GenomicsService.new
      #
      # @see https://cloud.google.com/genomics
      class GenomicsService < Google::Apis::Core::BaseService
        # @return [String]
        #  API key. Your API key identifies your project and provides you with API access,
        #  quota, and reports. Required unless you provide an OAuth 2.0 token.
        attr_accessor :key

        # @return [String]
        #  Available to use for quota purposes for server-side applications. Can be any
        #  arbitrary string assigned to a user, but should not exceed 40 characters.
        attr_accessor :quota_user

        def initialize
          super('https://genomics.googleapis.com/', '',
                client_name: 'google-apis-genomics_v2alpha1',
                client_version: Google::Apis::GenomicsV2alpha1::GEM_VERSION)
          @batch_path = 'batch'
        end
        
        # Runs a pipeline. The returned Operation's metadata field will contain a google.
        # genomics.v2alpha1.Metadata object describing the status of the pipeline
        # execution. The [response] field will contain a google.genomics.v2alpha1.
        # RunPipelineResponse object if the pipeline completes successfully. **Note:**
        # Before you can use this method, the Genomics Service Agent must have access to
        # your project. This is done automatically when the Cloud Genomics API is first
        # enabled, but if you delete this permission, or if you enabled the Cloud
        # Genomics API before the v2alpha1 API launch, you must disable and re-enable
        # the API to grant the Genomics Service Agent the required permissions.
        # Authorization requires the following [Google IAM](https://cloud.google.com/iam/
        # ) permission: * `genomics.operations.create` [1]: /genomics/gsa
        # @param [Google::Apis::GenomicsV2alpha1::RunPipelineRequest] run_pipeline_request_object
        # @param [String] fields
        #   Selector specifying which fields to include in a partial response.
        # @param [String] quota_user
        #   Available to use for quota purposes for server-side applications. Can be any
        #   arbitrary string assigned to a user, but should not exceed 40 characters.
        # @param [Google::Apis::RequestOptions] options
        #   Request-specific options
        #
        # @yield [result, err] Result & error if block supplied
        # @yieldparam result [Google::Apis::GenomicsV2alpha1::Operation] parsed result object
        # @yieldparam err [StandardError] error object if request failed
        #
        # @return [Google::Apis::GenomicsV2alpha1::Operation]
        #
        # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
        # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
        # @raise [Google::Apis::AuthorizationError] Authorization is required
        def run_pipeline(run_pipeline_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
          command = make_simple_command(:post, 'v2alpha1/pipelines:run', options)
          command.request_representation = Google::Apis::GenomicsV2alpha1::RunPipelineRequest::Representation
          command.request_object = run_pipeline_request_object
          command.response_representation = Google::Apis::GenomicsV2alpha1::Operation::Representation
          command.response_class = Google::Apis::GenomicsV2alpha1::Operation
          command.query['fields'] = fields unless fields.nil?
          command.query['quotaUser'] = quota_user unless quota_user.nil?
          execute_or_queue_command(command, &block)
        end
        
        # Starts asynchronous cancellation on a long-running operation. The server makes
        # a best effort to cancel the operation, but success is not guaranteed. Clients
        # may use Operations.GetOperation or Operations.ListOperations to check whether
        # the cancellation succeeded or the operation completed despite cancellation.
        # Authorization requires the following [Google IAM](https://cloud.google.com/iam)
        # permission: * `genomics.operations.cancel`
        # @param [String] name
        #   The name of the operation resource to be cancelled.
        # @param [Google::Apis::GenomicsV2alpha1::CancelOperationRequest] cancel_operation_request_object
        # @param [String] fields
        #   Selector specifying which fields to include in a partial response.
        # @param [String] quota_user
        #   Available to use for quota purposes for server-side applications. Can be any
        #   arbitrary string assigned to a user, but should not exceed 40 characters.
        # @param [Google::Apis::RequestOptions] options
        #   Request-specific options
        #
        # @yield [result, err] Result & error if block supplied
        # @yieldparam result [Google::Apis::GenomicsV2alpha1::Empty] parsed result object
        # @yieldparam err [StandardError] error object if request failed
        #
        # @return [Google::Apis::GenomicsV2alpha1::Empty]
        #
        # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
        # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
        # @raise [Google::Apis::AuthorizationError] Authorization is required
        def cancel_operation(name, cancel_operation_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
          command = make_simple_command(:post, 'v2alpha1/{+name}:cancel', options)
          command.request_representation = Google::Apis::GenomicsV2alpha1::CancelOperationRequest::Representation
          command.request_object = cancel_operation_request_object
          command.response_representation = Google::Apis::GenomicsV2alpha1::Empty::Representation
          command.response_class = Google::Apis::GenomicsV2alpha1::Empty
          command.params['name'] = name unless name.nil?
          command.query['fields'] = fields unless fields.nil?
          command.query['quotaUser'] = quota_user unless quota_user.nil?
          execute_or_queue_command(command, &block)
        end
        
        # Gets the latest state of a long-running operation. Clients can use this method
        # to poll the operation result at intervals as recommended by the API service.
        # Authorization requires the following [Google IAM](https://cloud.google.com/iam)
        # permission: * `genomics.operations.get`
        # @param [String] name
        #   The name of the operation resource.
        # @param [String] fields
        #   Selector specifying which fields to include in a partial response.
        # @param [String] quota_user
        #   Available to use for quota purposes for server-side applications. Can be any
        #   arbitrary string assigned to a user, but should not exceed 40 characters.
        # @param [Google::Apis::RequestOptions] options
        #   Request-specific options
        #
        # @yield [result, err] Result & error if block supplied
        # @yieldparam result [Google::Apis::GenomicsV2alpha1::Operation] parsed result object
        # @yieldparam err [StandardError] error object if request failed
        #
        # @return [Google::Apis::GenomicsV2alpha1::Operation]
        #
        # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
        # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
        # @raise [Google::Apis::AuthorizationError] Authorization is required
        def get_project_operation(name, fields: nil, quota_user: nil, options: nil, &block)
          command = make_simple_command(:get, 'v2alpha1/{+name}', options)
          command.response_representation = Google::Apis::GenomicsV2alpha1::Operation::Representation
          command.response_class = Google::Apis::GenomicsV2alpha1::Operation
          command.params['name'] = name unless name.nil?
          command.query['fields'] = fields unless fields.nil?
          command.query['quotaUser'] = quota_user unless quota_user.nil?
          execute_or_queue_command(command, &block)
        end
        
        # Lists operations that match the specified filter in the request. Authorization
        # requires the following [Google IAM](https://cloud.google.com/iam) permission: *
        # `genomics.operations.list`
        # @param [String] name
        #   The name of the operation's parent resource.
        # @param [String] filter
        #   A string for filtering Operations. In v2alpha1, the following filter fields
        #   are supported: * createTime: The time this job was created * events: The set
        #   of event (names) that have occurred while running the pipeline. The : operator
        #   can be used to determine if a particular event has occurred. * error: If the
        #   pipeline is running, this value is NULL. Once the pipeline finishes, the value
        #   is the standard Google error code. * labels.key or labels."key with space"
        #   where key is a label key. * done: If the pipeline is running, this value is
        #   false. Once the pipeline finishes, the value is true. In v1 and v1alpha2, the
        #   following filter fields are supported: * projectId: Required. Corresponds to
        #   OperationMetadata.projectId. * createTime: The time this job was created, in
        #   seconds from the [epoch](http://en.wikipedia.org/wiki/Unix_time). Can use `>=`
        #   and/or `<=` operators. * status: Can be `RUNNING`, `SUCCESS`, `FAILURE`, or `
        #   CANCELED`. Only one status may be specified. * labels.key where key is a label
        #   key. Examples: * `projectId = my-project AND createTime >= 1432140000` * `
        #   projectId = my-project AND createTime >= 1432140000 AND createTime <=
        #   1432150000 AND status = RUNNING` * `projectId = my-project AND labels.color = *
        #   ` * `projectId = my-project AND labels.color = red`
        # @param [Fixnum] page_size
        #   The maximum number of results to return. The maximum value is 256.
        # @param [String] page_token
        #   The standard list page token.
        # @param [String] fields
        #   Selector specifying which fields to include in a partial response.
        # @param [String] quota_user
        #   Available to use for quota purposes for server-side applications. Can be any
        #   arbitrary string assigned to a user, but should not exceed 40 characters.
        # @param [Google::Apis::RequestOptions] options
        #   Request-specific options
        #
        # @yield [result, err] Result & error if block supplied
        # @yieldparam result [Google::Apis::GenomicsV2alpha1::ListOperationsResponse] parsed result object
        # @yieldparam err [StandardError] error object if request failed
        #
        # @return [Google::Apis::GenomicsV2alpha1::ListOperationsResponse]
        #
        # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
        # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
        # @raise [Google::Apis::AuthorizationError] Authorization is required
        def list_project_operations(name, filter: nil, page_size: nil, page_token: nil, fields: nil, quota_user: nil, options: nil, &block)
          command = make_simple_command(:get, 'v2alpha1/{+name}', options)
          command.response_representation = Google::Apis::GenomicsV2alpha1::ListOperationsResponse::Representation
          command.response_class = Google::Apis::GenomicsV2alpha1::ListOperationsResponse
          command.params['name'] = name unless name.nil?
          command.query['filter'] = filter unless filter.nil?
          command.query['pageSize'] = page_size unless page_size.nil?
          command.query['pageToken'] = page_token unless page_token.nil?
          command.query['fields'] = fields unless fields.nil?
          command.query['quotaUser'] = quota_user unless quota_user.nil?
          execute_or_queue_command(command, &block)
        end
        
        # The worker uses this method to retrieve the assigned operation and provide
        # periodic status updates.
        # @param [String] id
        #   The VM identity token for authenticating the VM instance. https://cloud.google.
        #   com/compute/docs/instances/verifying-instance-identity
        # @param [Google::Apis::GenomicsV2alpha1::CheckInRequest] check_in_request_object
        # @param [String] fields
        #   Selector specifying which fields to include in a partial response.
        # @param [String] quota_user
        #   Available to use for quota purposes for server-side applications. Can be any
        #   arbitrary string assigned to a user, but should not exceed 40 characters.
        # @param [Google::Apis::RequestOptions] options
        #   Request-specific options
        #
        # @yield [result, err] Result & error if block supplied
        # @yieldparam result [Google::Apis::GenomicsV2alpha1::CheckInResponse] parsed result object
        # @yieldparam err [StandardError] error object if request failed
        #
        # @return [Google::Apis::GenomicsV2alpha1::CheckInResponse]
        #
        # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
        # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
        # @raise [Google::Apis::AuthorizationError] Authorization is required
        def check_project_worker_in(id, check_in_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
          command = make_simple_command(:post, 'v2alpha1/{+id}:checkIn', options)
          command.request_representation = Google::Apis::GenomicsV2alpha1::CheckInRequest::Representation
          command.request_object = check_in_request_object
          command.response_representation = Google::Apis::GenomicsV2alpha1::CheckInResponse::Representation
          command.response_class = Google::Apis::GenomicsV2alpha1::CheckInResponse
          command.params['id'] = id unless id.nil?
          command.query['fields'] = fields unless fields.nil?
          command.query['quotaUser'] = quota_user unless quota_user.nil?
          execute_or_queue_command(command, &block)
        end
        
        # The worker uses this method to retrieve the assigned operation and provide
        # periodic status updates.
        # @param [String] id
        #   The VM identity token for authenticating the VM instance. https://cloud.google.
        #   com/compute/docs/instances/verifying-instance-identity
        # @param [Google::Apis::GenomicsV2alpha1::CheckInRequest] check_in_request_object
        # @param [String] fields
        #   Selector specifying which fields to include in a partial response.
        # @param [String] quota_user
        #   Available to use for quota purposes for server-side applications. Can be any
        #   arbitrary string assigned to a user, but should not exceed 40 characters.
        # @param [Google::Apis::RequestOptions] options
        #   Request-specific options
        #
        # @yield [result, err] Result & error if block supplied
        # @yieldparam result [Google::Apis::GenomicsV2alpha1::CheckInResponse] parsed result object
        # @yieldparam err [StandardError] error object if request failed
        #
        # @return [Google::Apis::GenomicsV2alpha1::CheckInResponse]
        #
        # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
        # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
        # @raise [Google::Apis::AuthorizationError] Authorization is required
        def check_worker_in(id, check_in_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
          command = make_simple_command(:post, 'v2alpha1/workers/{id}:checkIn', options)
          command.request_representation = Google::Apis::GenomicsV2alpha1::CheckInRequest::Representation
          command.request_object = check_in_request_object
          command.response_representation = Google::Apis::GenomicsV2alpha1::CheckInResponse::Representation
          command.response_class = Google::Apis::GenomicsV2alpha1::CheckInResponse
          command.params['id'] = id unless id.nil?
          command.query['fields'] = fields unless fields.nil?
          command.query['quotaUser'] = quota_user unless quota_user.nil?
          execute_or_queue_command(command, &block)
        end

        protected

        def apply_command_defaults(command)
          command.query['key'] = key unless key.nil?
          command.query['quotaUser'] = quota_user unless quota_user.nil?
        end
      end
    end
  end
end