910 lines
31 KiB
Ruby
910 lines
31 KiB
Ruby
# Copyright 2015 Google Inc.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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require 'date'
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require 'google/apis/core/base_service'
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require 'google/apis/core/json_representation'
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require 'google/apis/core/hashable'
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require 'google/apis/errors'
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module Google
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module Apis
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module GenomicsV1
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class ListDatasetsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class Dataset
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class Empty
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class UndeleteDatasetRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class SetIamPolicyRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class Policy
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class Binding
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class GetIamPolicyRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class TestIamPermissionsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class TestIamPermissionsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class Operation
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class Status
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class ListOperationsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class CancelOperationRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class ImportReadGroupSetsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class ExportReadGroupSetRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class SearchReadGroupSetsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class SearchReadGroupSetsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class ReadGroupSet
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class ReadGroup
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class Experiment
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class Program
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class ListCoverageBucketsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class CoverageBucket
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class Range
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class SearchReadsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class SearchReadsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class Read
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class LinearAlignment
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class Position
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class CigarUnit
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class StreamReadsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class StreamReadsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class SearchReferenceSetsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class SearchReferenceSetsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class ReferenceSet
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class SearchReferencesRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class SearchReferencesResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class Reference
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class ListBasesResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class ImportVariantsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class VariantSet
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class ReferenceBound
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class VariantSetMetadata
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class ExportVariantSetRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class SearchVariantSetsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class SearchVariantSetsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class SearchVariantsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class SearchVariantsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class Variant
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class VariantCall
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class SearchCallSetsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class SearchCallSetsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class CallSet
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class StreamVariantsRequest
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class StreamVariantsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class ImportReadGroupSetsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class ImportVariantsResponse
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class OperationMetadata
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class OperationEvent
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class Representation < Google::Apis::Core::JsonRepresentation; end
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end
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class ListDatasetsResponse
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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collection :datasets, as: 'datasets', class: Google::Apis::GenomicsV1::Dataset, decorator: Google::Apis::GenomicsV1::Dataset::Representation
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property :next_page_token, as: 'nextPageToken'
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end
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end
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class Dataset
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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property :id, as: 'id'
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property :project_id, as: 'projectId'
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property :name, as: 'name'
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property :create_time, as: 'createTime'
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end
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end
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class Empty
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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end
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end
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class UndeleteDatasetRequest
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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end
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end
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class SetIamPolicyRequest
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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property :policy, as: 'policy', class: Google::Apis::GenomicsV1::Policy, decorator: Google::Apis::GenomicsV1::Policy::Representation
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end
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end
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class Policy
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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property :version, as: 'version'
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collection :bindings, as: 'bindings', class: Google::Apis::GenomicsV1::Binding, decorator: Google::Apis::GenomicsV1::Binding::Representation
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property :etag, :base64 => true, as: 'etag'
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end
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end
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class Binding
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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property :role, as: 'role'
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collection :members, as: 'members'
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end
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end
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class GetIamPolicyRequest
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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end
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end
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class TestIamPermissionsRequest
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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collection :permissions, as: 'permissions'
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end
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end
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class TestIamPermissionsResponse
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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collection :permissions, as: 'permissions'
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end
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end
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class Operation
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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property :name, as: 'name'
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hash :metadata, as: 'metadata'
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property :done, as: 'done'
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property :error, as: 'error', class: Google::Apis::GenomicsV1::Status, decorator: Google::Apis::GenomicsV1::Status::Representation
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hash :response, as: 'response'
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end
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end
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class Status
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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property :code, as: 'code'
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property :message, as: 'message'
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collection :details, as: 'details'
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end
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end
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class ListOperationsResponse
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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collection :operations, as: 'operations', class: Google::Apis::GenomicsV1::Operation, decorator: Google::Apis::GenomicsV1::Operation::Representation
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property :next_page_token, as: 'nextPageToken'
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end
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end
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class CancelOperationRequest
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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end
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end
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class ImportReadGroupSetsRequest
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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property :dataset_id, as: 'datasetId'
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property :reference_set_id, as: 'referenceSetId'
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collection :source_uris, as: 'sourceUris'
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property :partition_strategy, as: 'partitionStrategy'
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end
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end
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class ExportReadGroupSetRequest
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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property :project_id, as: 'projectId'
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property :export_uri, as: 'exportUri'
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collection :reference_names, as: 'referenceNames'
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end
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end
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class SearchReadGroupSetsRequest
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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collection :dataset_ids, as: 'datasetIds'
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property :name, as: 'name'
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property :page_token, as: 'pageToken'
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property :page_size, as: 'pageSize'
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end
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end
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class SearchReadGroupSetsResponse
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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collection :read_group_sets, as: 'readGroupSets', class: Google::Apis::GenomicsV1::ReadGroupSet, decorator: Google::Apis::GenomicsV1::ReadGroupSet::Representation
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property :next_page_token, as: 'nextPageToken'
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end
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end
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class ReadGroupSet
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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property :id, as: 'id'
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property :dataset_id, as: 'datasetId'
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property :reference_set_id, as: 'referenceSetId'
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property :name, as: 'name'
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property :filename, as: 'filename'
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collection :read_groups, as: 'readGroups', class: Google::Apis::GenomicsV1::ReadGroup, decorator: Google::Apis::GenomicsV1::ReadGroup::Representation
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hash :info, as: 'info', :class => Array do
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include Representable::JSON::Collection
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items
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end
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end
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end
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class ReadGroup
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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property :id, as: 'id'
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property :dataset_id, as: 'datasetId'
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property :name, as: 'name'
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property :description, as: 'description'
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property :sample_id, as: 'sampleId'
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property :experiment, as: 'experiment', class: Google::Apis::GenomicsV1::Experiment, decorator: Google::Apis::GenomicsV1::Experiment::Representation
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property :predicted_insert_size, as: 'predictedInsertSize'
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collection :programs, as: 'programs', class: Google::Apis::GenomicsV1::Program, decorator: Google::Apis::GenomicsV1::Program::Representation
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property :reference_set_id, as: 'referenceSetId'
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hash :info, as: 'info', :class => Array do
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include Representable::JSON::Collection
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items
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end
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end
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end
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class Experiment
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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property :library_id, as: 'libraryId'
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property :platform_unit, as: 'platformUnit'
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property :sequencing_center, as: 'sequencingCenter'
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property :instrument_model, as: 'instrumentModel'
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end
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end
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class Program
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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property :command_line, as: 'commandLine'
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property :id, as: 'id'
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property :name, as: 'name'
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property :prev_program_id, as: 'prevProgramId'
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property :version, as: 'version'
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end
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end
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class ListCoverageBucketsResponse
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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property :bucket_width, as: 'bucketWidth'
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collection :coverage_buckets, as: 'coverageBuckets', class: Google::Apis::GenomicsV1::CoverageBucket, decorator: Google::Apis::GenomicsV1::CoverageBucket::Representation
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property :next_page_token, as: 'nextPageToken'
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end
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end
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class CoverageBucket
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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property :range, as: 'range', class: Google::Apis::GenomicsV1::Range, decorator: Google::Apis::GenomicsV1::Range::Representation
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property :mean_coverage, as: 'meanCoverage'
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end
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end
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class Range
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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property :reference_name, as: 'referenceName'
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property :start, as: 'start'
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property :end, as: 'end'
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end
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end
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class SearchReadsRequest
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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collection :read_group_set_ids, as: 'readGroupSetIds'
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collection :read_group_ids, as: 'readGroupIds'
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property :reference_name, as: 'referenceName'
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property :start, as: 'start'
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property :end, as: 'end'
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property :page_token, as: 'pageToken'
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property :page_size, as: 'pageSize'
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end
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end
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class SearchReadsResponse
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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collection :alignments, as: 'alignments', class: Google::Apis::GenomicsV1::Read, decorator: Google::Apis::GenomicsV1::Read::Representation
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property :next_page_token, as: 'nextPageToken'
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end
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end
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class Read
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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property :id, as: 'id'
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property :read_group_id, as: 'readGroupId'
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property :read_group_set_id, as: 'readGroupSetId'
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property :fragment_name, as: 'fragmentName'
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property :proper_placement, as: 'properPlacement'
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property :duplicate_fragment, as: 'duplicateFragment'
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property :fragment_length, as: 'fragmentLength'
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property :read_number, as: 'readNumber'
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property :number_reads, as: 'numberReads'
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property :failed_vendor_quality_checks, as: 'failedVendorQualityChecks'
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property :alignment, as: 'alignment', class: Google::Apis::GenomicsV1::LinearAlignment, decorator: Google::Apis::GenomicsV1::LinearAlignment::Representation
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property :secondary_alignment, as: 'secondaryAlignment'
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property :supplementary_alignment, as: 'supplementaryAlignment'
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property :aligned_sequence, as: 'alignedSequence'
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collection :aligned_quality, as: 'alignedQuality'
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property :next_mate_position, as: 'nextMatePosition', class: Google::Apis::GenomicsV1::Position, decorator: Google::Apis::GenomicsV1::Position::Representation
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hash :info, as: 'info', :class => Array do
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include Representable::JSON::Collection
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items
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end
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end
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end
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class LinearAlignment
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# @private
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class Representation < Google::Apis::Core::JsonRepresentation
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property :position, as: 'position', class: Google::Apis::GenomicsV1::Position, decorator: Google::Apis::GenomicsV1::Position::Representation
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property :mapping_quality, as: 'mappingQuality'
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collection :cigar, as: 'cigar', class: Google::Apis::GenomicsV1::CigarUnit, decorator: Google::Apis::GenomicsV1::CigarUnit::Representation
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end
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end
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|
|
class Position
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
property :reference_name, as: 'referenceName'
|
|
property :position, as: 'position'
|
|
property :reverse_strand, as: 'reverseStrand'
|
|
end
|
|
end
|
|
|
|
class CigarUnit
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
property :operation, as: 'operation'
|
|
property :operation_length, as: 'operationLength'
|
|
property :reference_sequence, as: 'referenceSequence'
|
|
end
|
|
end
|
|
|
|
class StreamReadsRequest
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
property :project_id, as: 'projectId'
|
|
property :read_group_set_id, as: 'readGroupSetId'
|
|
property :reference_name, as: 'referenceName'
|
|
property :start, as: 'start'
|
|
property :end, as: 'end'
|
|
end
|
|
end
|
|
|
|
class StreamReadsResponse
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
collection :alignments, as: 'alignments', class: Google::Apis::GenomicsV1::Read, decorator: Google::Apis::GenomicsV1::Read::Representation
|
|
|
|
end
|
|
end
|
|
|
|
class SearchReferenceSetsRequest
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
collection :md5checksums, as: 'md5checksums'
|
|
collection :accessions, as: 'accessions'
|
|
property :assembly_id, as: 'assemblyId'
|
|
property :page_token, as: 'pageToken'
|
|
property :page_size, as: 'pageSize'
|
|
end
|
|
end
|
|
|
|
class SearchReferenceSetsResponse
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
collection :reference_sets, as: 'referenceSets', class: Google::Apis::GenomicsV1::ReferenceSet, decorator: Google::Apis::GenomicsV1::ReferenceSet::Representation
|
|
|
|
property :next_page_token, as: 'nextPageToken'
|
|
end
|
|
end
|
|
|
|
class ReferenceSet
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
property :id, as: 'id'
|
|
collection :reference_ids, as: 'referenceIds'
|
|
property :md5checksum, as: 'md5checksum'
|
|
property :ncbi_taxon_id, as: 'ncbiTaxonId'
|
|
property :description, as: 'description'
|
|
property :assembly_id, as: 'assemblyId'
|
|
property :source_uri, as: 'sourceUri'
|
|
collection :source_accessions, as: 'sourceAccessions'
|
|
end
|
|
end
|
|
|
|
class SearchReferencesRequest
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
collection :md5checksums, as: 'md5checksums'
|
|
collection :accessions, as: 'accessions'
|
|
property :reference_set_id, as: 'referenceSetId'
|
|
property :page_token, as: 'pageToken'
|
|
property :page_size, as: 'pageSize'
|
|
end
|
|
end
|
|
|
|
class SearchReferencesResponse
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
collection :references, as: 'references', class: Google::Apis::GenomicsV1::Reference, decorator: Google::Apis::GenomicsV1::Reference::Representation
|
|
|
|
property :next_page_token, as: 'nextPageToken'
|
|
end
|
|
end
|
|
|
|
class Reference
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
property :id, as: 'id'
|
|
property :length, as: 'length'
|
|
property :md5checksum, as: 'md5checksum'
|
|
property :name, as: 'name'
|
|
property :source_uri, as: 'sourceUri'
|
|
collection :source_accessions, as: 'sourceAccessions'
|
|
property :ncbi_taxon_id, as: 'ncbiTaxonId'
|
|
end
|
|
end
|
|
|
|
class ListBasesResponse
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
property :offset, as: 'offset'
|
|
property :sequence, as: 'sequence'
|
|
property :next_page_token, as: 'nextPageToken'
|
|
end
|
|
end
|
|
|
|
class ImportVariantsRequest
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
property :variant_set_id, as: 'variantSetId'
|
|
collection :source_uris, as: 'sourceUris'
|
|
property :format, as: 'format'
|
|
property :normalize_reference_names, as: 'normalizeReferenceNames'
|
|
end
|
|
end
|
|
|
|
class VariantSet
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
property :dataset_id, as: 'datasetId'
|
|
property :id, as: 'id'
|
|
property :reference_set_id, as: 'referenceSetId'
|
|
collection :reference_bounds, as: 'referenceBounds', class: Google::Apis::GenomicsV1::ReferenceBound, decorator: Google::Apis::GenomicsV1::ReferenceBound::Representation
|
|
|
|
collection :metadata, as: 'metadata', class: Google::Apis::GenomicsV1::VariantSetMetadata, decorator: Google::Apis::GenomicsV1::VariantSetMetadata::Representation
|
|
|
|
end
|
|
end
|
|
|
|
class ReferenceBound
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
property :reference_name, as: 'referenceName'
|
|
property :upper_bound, as: 'upperBound'
|
|
end
|
|
end
|
|
|
|
class VariantSetMetadata
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
property :key, as: 'key'
|
|
property :value, as: 'value'
|
|
property :id, as: 'id'
|
|
property :type, as: 'type'
|
|
property :number, as: 'number'
|
|
property :description, as: 'description'
|
|
hash :info, as: 'info', :class => Array do
|
|
include Representable::JSON::Collection
|
|
items
|
|
end
|
|
|
|
end
|
|
end
|
|
|
|
class ExportVariantSetRequest
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
collection :call_set_ids, as: 'callSetIds'
|
|
property :project_id, as: 'projectId'
|
|
property :format, as: 'format'
|
|
property :bigquery_dataset, as: 'bigqueryDataset'
|
|
property :bigquery_table, as: 'bigqueryTable'
|
|
end
|
|
end
|
|
|
|
class SearchVariantSetsRequest
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
collection :dataset_ids, as: 'datasetIds'
|
|
property :page_token, as: 'pageToken'
|
|
property :page_size, as: 'pageSize'
|
|
end
|
|
end
|
|
|
|
class SearchVariantSetsResponse
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
collection :variant_sets, as: 'variantSets', class: Google::Apis::GenomicsV1::VariantSet, decorator: Google::Apis::GenomicsV1::VariantSet::Representation
|
|
|
|
property :next_page_token, as: 'nextPageToken'
|
|
end
|
|
end
|
|
|
|
class SearchVariantsRequest
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
collection :variant_set_ids, as: 'variantSetIds'
|
|
property :variant_name, as: 'variantName'
|
|
collection :call_set_ids, as: 'callSetIds'
|
|
property :reference_name, as: 'referenceName'
|
|
property :start, as: 'start'
|
|
property :end, as: 'end'
|
|
property :page_token, as: 'pageToken'
|
|
property :page_size, as: 'pageSize'
|
|
property :max_calls, as: 'maxCalls'
|
|
end
|
|
end
|
|
|
|
class SearchVariantsResponse
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
collection :variants, as: 'variants', class: Google::Apis::GenomicsV1::Variant, decorator: Google::Apis::GenomicsV1::Variant::Representation
|
|
|
|
property :next_page_token, as: 'nextPageToken'
|
|
end
|
|
end
|
|
|
|
class Variant
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
property :variant_set_id, as: 'variantSetId'
|
|
property :id, as: 'id'
|
|
collection :names, as: 'names'
|
|
property :created, as: 'created'
|
|
property :reference_name, as: 'referenceName'
|
|
property :start, as: 'start'
|
|
property :end, as: 'end'
|
|
property :reference_bases, as: 'referenceBases'
|
|
collection :alternate_bases, as: 'alternateBases'
|
|
property :quality, as: 'quality'
|
|
collection :filter, as: 'filter'
|
|
hash :info, as: 'info', :class => Array do
|
|
include Representable::JSON::Collection
|
|
items
|
|
end
|
|
|
|
collection :calls, as: 'calls', class: Google::Apis::GenomicsV1::VariantCall, decorator: Google::Apis::GenomicsV1::VariantCall::Representation
|
|
|
|
end
|
|
end
|
|
|
|
class VariantCall
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
property :call_set_id, as: 'callSetId'
|
|
property :call_set_name, as: 'callSetName'
|
|
collection :genotype, as: 'genotype'
|
|
property :phaseset, as: 'phaseset'
|
|
collection :genotype_likelihood, as: 'genotypeLikelihood'
|
|
hash :info, as: 'info', :class => Array do
|
|
include Representable::JSON::Collection
|
|
items
|
|
end
|
|
|
|
end
|
|
end
|
|
|
|
class SearchCallSetsRequest
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
collection :variant_set_ids, as: 'variantSetIds'
|
|
property :name, as: 'name'
|
|
property :page_token, as: 'pageToken'
|
|
property :page_size, as: 'pageSize'
|
|
end
|
|
end
|
|
|
|
class SearchCallSetsResponse
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
collection :call_sets, as: 'callSets', class: Google::Apis::GenomicsV1::CallSet, decorator: Google::Apis::GenomicsV1::CallSet::Representation
|
|
|
|
property :next_page_token, as: 'nextPageToken'
|
|
end
|
|
end
|
|
|
|
class CallSet
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
property :id, as: 'id'
|
|
property :name, as: 'name'
|
|
property :sample_id, as: 'sampleId'
|
|
collection :variant_set_ids, as: 'variantSetIds'
|
|
property :created, as: 'created'
|
|
hash :info, as: 'info', :class => Array do
|
|
include Representable::JSON::Collection
|
|
items
|
|
end
|
|
|
|
end
|
|
end
|
|
|
|
class StreamVariantsRequest
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
property :project_id, as: 'projectId'
|
|
property :variant_set_id, as: 'variantSetId'
|
|
collection :call_set_ids, as: 'callSetIds'
|
|
property :reference_name, as: 'referenceName'
|
|
property :start, as: 'start'
|
|
property :end, as: 'end'
|
|
end
|
|
end
|
|
|
|
class StreamVariantsResponse
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
collection :variants, as: 'variants', class: Google::Apis::GenomicsV1::Variant, decorator: Google::Apis::GenomicsV1::Variant::Representation
|
|
|
|
end
|
|
end
|
|
|
|
class ImportReadGroupSetsResponse
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
collection :read_group_set_ids, as: 'readGroupSetIds'
|
|
end
|
|
end
|
|
|
|
class ImportVariantsResponse
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
collection :call_set_ids, as: 'callSetIds'
|
|
end
|
|
end
|
|
|
|
class OperationMetadata
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
property :project_id, as: 'projectId'
|
|
property :create_time, as: 'createTime'
|
|
hash :request, as: 'request'
|
|
collection :events, as: 'events', class: Google::Apis::GenomicsV1::OperationEvent, decorator: Google::Apis::GenomicsV1::OperationEvent::Representation
|
|
|
|
end
|
|
end
|
|
|
|
class OperationEvent
|
|
# @private
|
|
class Representation < Google::Apis::Core::JsonRepresentation
|
|
property :description, as: 'description'
|
|
end
|
|
end
|
|
end
|
|
end
|
|
end
|