427 lines
26 KiB
Ruby
427 lines
26 KiB
Ruby
# Copyright 2020 Google LLC
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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require 'google/apis/core/base_service'
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require 'google/apis/core/json_representation'
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require 'google/apis/core/hashable'
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require 'google/apis/errors'
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module Google
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module Apis
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module GenomicsV1alpha2
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# Genomics API
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#
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# Uploads, processes, queries, and searches Genomics data in the cloud.
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#
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# @example
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# require 'google/apis/genomics_v1alpha2'
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#
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# Genomics = Google::Apis::GenomicsV1alpha2 # Alias the module
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# service = Genomics::GenomicsService.new
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#
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# @see https://cloud.google.com/genomics
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class GenomicsService < Google::Apis::Core::BaseService
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# @return [String]
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# API key. Your API key identifies your project and provides you with API access,
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# quota, and reports. Required unless you provide an OAuth 2.0 token.
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attr_accessor :key
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# @return [String]
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# Available to use for quota purposes for server-side applications. Can be any
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# arbitrary string assigned to a user, but should not exceed 40 characters.
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attr_accessor :quota_user
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def initialize
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super('https://genomics.googleapis.com/', '',
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client_name: 'google-apis-genomics_v1alpha2',
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client_version: Google::Apis::GenomicsV1alpha2::GEM_VERSION)
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@batch_path = 'batch'
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end
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# Starts asynchronous cancellation on a long-running operation. The server makes
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# a best effort to cancel the operation, but success is not guaranteed. Clients
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# may use Operations.GetOperation or Operations.ListOperations to check whether
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# the cancellation succeeded or the operation completed despite cancellation.
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# Authorization requires the following [Google IAM](https://cloud.google.com/iam)
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# permission: * `genomics.operations.cancel`
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# @param [String] name
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# The name of the operation resource to be cancelled.
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# @param [Google::Apis::GenomicsV1alpha2::CancelOperationRequest] cancel_operation_request_object
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# @param [String] fields
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# Selector specifying which fields to include in a partial response.
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# @param [String] quota_user
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# Available to use for quota purposes for server-side applications. Can be any
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# arbitrary string assigned to a user, but should not exceed 40 characters.
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# @param [Google::Apis::RequestOptions] options
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# Request-specific options
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#
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# @yield [result, err] Result & error if block supplied
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# @yieldparam result [Google::Apis::GenomicsV1alpha2::Empty] parsed result object
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# @yieldparam err [StandardError] error object if request failed
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#
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# @return [Google::Apis::GenomicsV1alpha2::Empty]
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#
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# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
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# @raise [Google::Apis::AuthorizationError] Authorization is required
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def cancel_operation(name, cancel_operation_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
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command = make_simple_command(:post, 'v1alpha2/{+name}:cancel', options)
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command.request_representation = Google::Apis::GenomicsV1alpha2::CancelOperationRequest::Representation
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command.request_object = cancel_operation_request_object
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command.response_representation = Google::Apis::GenomicsV1alpha2::Empty::Representation
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command.response_class = Google::Apis::GenomicsV1alpha2::Empty
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command.params['name'] = name unless name.nil?
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command.query['fields'] = fields unless fields.nil?
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command.query['quotaUser'] = quota_user unless quota_user.nil?
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execute_or_queue_command(command, &block)
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end
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# Gets the latest state of a long-running operation. Clients can use this method
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# to poll the operation result at intervals as recommended by the API service.
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# Authorization requires the following [Google IAM](https://cloud.google.com/iam)
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# permission: * `genomics.operations.get`
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# @param [String] name
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# The name of the operation resource.
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# @param [String] fields
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# Selector specifying which fields to include in a partial response.
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# @param [String] quota_user
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# Available to use for quota purposes for server-side applications. Can be any
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# arbitrary string assigned to a user, but should not exceed 40 characters.
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# @param [Google::Apis::RequestOptions] options
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# Request-specific options
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#
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# @yield [result, err] Result & error if block supplied
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# @yieldparam result [Google::Apis::GenomicsV1alpha2::Operation] parsed result object
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# @yieldparam err [StandardError] error object if request failed
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#
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# @return [Google::Apis::GenomicsV1alpha2::Operation]
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#
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# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
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# @raise [Google::Apis::AuthorizationError] Authorization is required
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def get_operation(name, fields: nil, quota_user: nil, options: nil, &block)
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command = make_simple_command(:get, 'v1alpha2/{+name}', options)
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command.response_representation = Google::Apis::GenomicsV1alpha2::Operation::Representation
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command.response_class = Google::Apis::GenomicsV1alpha2::Operation
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command.params['name'] = name unless name.nil?
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command.query['fields'] = fields unless fields.nil?
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command.query['quotaUser'] = quota_user unless quota_user.nil?
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execute_or_queue_command(command, &block)
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end
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# Lists operations that match the specified filter in the request. Authorization
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# requires the following [Google IAM](https://cloud.google.com/iam) permission: *
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# `genomics.operations.list`
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# @param [String] name
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# The name of the operation's parent resource.
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# @param [String] filter
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# A string for filtering Operations. In v2alpha1, the following filter fields
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# are supported: * createTime: The time this job was created * events: The set
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# of event (names) that have occurred while running the pipeline. The : operator
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# can be used to determine if a particular event has occurred. * error: If the
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# pipeline is running, this value is NULL. Once the pipeline finishes, the value
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# is the standard Google error code. * labels.key or labels."key with space"
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# where key is a label key. * done: If the pipeline is running, this value is
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# false. Once the pipeline finishes, the value is true. In v1 and v1alpha2, the
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# following filter fields are supported: * projectId: Required. Corresponds to
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# OperationMetadata.projectId. * createTime: The time this job was created, in
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# seconds from the [epoch](http://en.wikipedia.org/wiki/Unix_time). Can use `>=`
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# and/or `<=` operators. * status: Can be `RUNNING`, `SUCCESS`, `FAILURE`, or `
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# CANCELED`. Only one status may be specified. * labels.key where key is a label
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# key. Examples: * `projectId = my-project AND createTime >= 1432140000` * `
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# projectId = my-project AND createTime >= 1432140000 AND createTime <=
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# 1432150000 AND status = RUNNING` * `projectId = my-project AND labels.color = *
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# ` * `projectId = my-project AND labels.color = red`
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# @param [Fixnum] page_size
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# The maximum number of results to return. The maximum value is 256.
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# @param [String] page_token
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# The standard list page token.
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# @param [String] fields
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# Selector specifying which fields to include in a partial response.
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# @param [String] quota_user
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# Available to use for quota purposes for server-side applications. Can be any
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# arbitrary string assigned to a user, but should not exceed 40 characters.
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# @param [Google::Apis::RequestOptions] options
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# Request-specific options
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#
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# @yield [result, err] Result & error if block supplied
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# @yieldparam result [Google::Apis::GenomicsV1alpha2::ListOperationsResponse] parsed result object
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# @yieldparam err [StandardError] error object if request failed
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#
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# @return [Google::Apis::GenomicsV1alpha2::ListOperationsResponse]
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#
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# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
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# @raise [Google::Apis::AuthorizationError] Authorization is required
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def list_operations(name, filter: nil, page_size: nil, page_token: nil, fields: nil, quota_user: nil, options: nil, &block)
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command = make_simple_command(:get, 'v1alpha2/{+name}', options)
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command.response_representation = Google::Apis::GenomicsV1alpha2::ListOperationsResponse::Representation
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command.response_class = Google::Apis::GenomicsV1alpha2::ListOperationsResponse
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command.params['name'] = name unless name.nil?
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command.query['filter'] = filter unless filter.nil?
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command.query['pageSize'] = page_size unless page_size.nil?
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command.query['pageToken'] = page_token unless page_token.nil?
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command.query['fields'] = fields unless fields.nil?
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command.query['quotaUser'] = quota_user unless quota_user.nil?
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execute_or_queue_command(command, &block)
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end
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# Creates a pipeline that can be run later. Create takes a Pipeline that has all
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# fields other than `pipelineId` populated, and then returns the same pipeline
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# with `pipelineId` populated. This id can be used to run the pipeline. Caller
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# must have WRITE permission to the project.
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# @param [Google::Apis::GenomicsV1alpha2::Pipeline] pipeline_object
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# @param [String] fields
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# Selector specifying which fields to include in a partial response.
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# @param [String] quota_user
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# Available to use for quota purposes for server-side applications. Can be any
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# arbitrary string assigned to a user, but should not exceed 40 characters.
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# @param [Google::Apis::RequestOptions] options
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# Request-specific options
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#
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# @yield [result, err] Result & error if block supplied
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# @yieldparam result [Google::Apis::GenomicsV1alpha2::Pipeline] parsed result object
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# @yieldparam err [StandardError] error object if request failed
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#
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# @return [Google::Apis::GenomicsV1alpha2::Pipeline]
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#
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# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
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# @raise [Google::Apis::AuthorizationError] Authorization is required
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def create_pipeline(pipeline_object = nil, fields: nil, quota_user: nil, options: nil, &block)
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command = make_simple_command(:post, 'v1alpha2/pipelines', options)
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command.request_representation = Google::Apis::GenomicsV1alpha2::Pipeline::Representation
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command.request_object = pipeline_object
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command.response_representation = Google::Apis::GenomicsV1alpha2::Pipeline::Representation
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command.response_class = Google::Apis::GenomicsV1alpha2::Pipeline
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command.query['fields'] = fields unless fields.nil?
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command.query['quotaUser'] = quota_user unless quota_user.nil?
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execute_or_queue_command(command, &block)
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end
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# Deletes a pipeline based on ID. Caller must have WRITE permission to the
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# project.
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# @param [String] pipeline_id
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# Caller must have WRITE access to the project in which this pipeline is defined.
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# @param [String] fields
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# Selector specifying which fields to include in a partial response.
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# @param [String] quota_user
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# Available to use for quota purposes for server-side applications. Can be any
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# arbitrary string assigned to a user, but should not exceed 40 characters.
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# @param [Google::Apis::RequestOptions] options
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# Request-specific options
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#
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# @yield [result, err] Result & error if block supplied
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# @yieldparam result [Google::Apis::GenomicsV1alpha2::Empty] parsed result object
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# @yieldparam err [StandardError] error object if request failed
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#
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# @return [Google::Apis::GenomicsV1alpha2::Empty]
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#
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# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
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# @raise [Google::Apis::AuthorizationError] Authorization is required
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def delete_pipeline(pipeline_id, fields: nil, quota_user: nil, options: nil, &block)
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command = make_simple_command(:delete, 'v1alpha2/pipelines/{pipelineId}', options)
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command.response_representation = Google::Apis::GenomicsV1alpha2::Empty::Representation
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command.response_class = Google::Apis::GenomicsV1alpha2::Empty
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command.params['pipelineId'] = pipeline_id unless pipeline_id.nil?
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command.query['fields'] = fields unless fields.nil?
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command.query['quotaUser'] = quota_user unless quota_user.nil?
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execute_or_queue_command(command, &block)
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end
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# Retrieves a pipeline based on ID. Caller must have READ permission to the
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# project.
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# @param [String] pipeline_id
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# Caller must have READ access to the project in which this pipeline is defined.
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# @param [String] fields
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# Selector specifying which fields to include in a partial response.
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# @param [String] quota_user
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# Available to use for quota purposes for server-side applications. Can be any
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# arbitrary string assigned to a user, but should not exceed 40 characters.
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# @param [Google::Apis::RequestOptions] options
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# Request-specific options
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#
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# @yield [result, err] Result & error if block supplied
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# @yieldparam result [Google::Apis::GenomicsV1alpha2::Pipeline] parsed result object
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# @yieldparam err [StandardError] error object if request failed
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#
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# @return [Google::Apis::GenomicsV1alpha2::Pipeline]
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#
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# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
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# @raise [Google::Apis::AuthorizationError] Authorization is required
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def get_pipeline(pipeline_id, fields: nil, quota_user: nil, options: nil, &block)
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command = make_simple_command(:get, 'v1alpha2/pipelines/{pipelineId}', options)
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command.response_representation = Google::Apis::GenomicsV1alpha2::Pipeline::Representation
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command.response_class = Google::Apis::GenomicsV1alpha2::Pipeline
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command.params['pipelineId'] = pipeline_id unless pipeline_id.nil?
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command.query['fields'] = fields unless fields.nil?
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command.query['quotaUser'] = quota_user unless quota_user.nil?
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execute_or_queue_command(command, &block)
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end
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# Gets controller configuration information. Should only be called by VMs
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# created by the Pipelines Service and not by end users.
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# @param [String] operation_id
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# The operation to retrieve controller configuration for.
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# @param [Fixnum] validation_token
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# @param [String] fields
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# Selector specifying which fields to include in a partial response.
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# @param [String] quota_user
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# Available to use for quota purposes for server-side applications. Can be any
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# arbitrary string assigned to a user, but should not exceed 40 characters.
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# @param [Google::Apis::RequestOptions] options
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# Request-specific options
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#
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# @yield [result, err] Result & error if block supplied
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# @yieldparam result [Google::Apis::GenomicsV1alpha2::ControllerConfig] parsed result object
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# @yieldparam err [StandardError] error object if request failed
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#
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# @return [Google::Apis::GenomicsV1alpha2::ControllerConfig]
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#
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# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
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# @raise [Google::Apis::AuthorizationError] Authorization is required
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def get_pipeline_controller_config(operation_id: nil, validation_token: nil, fields: nil, quota_user: nil, options: nil, &block)
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command = make_simple_command(:get, 'v1alpha2/pipelines:getControllerConfig', options)
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command.response_representation = Google::Apis::GenomicsV1alpha2::ControllerConfig::Representation
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command.response_class = Google::Apis::GenomicsV1alpha2::ControllerConfig
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command.query['operationId'] = operation_id unless operation_id.nil?
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command.query['validationToken'] = validation_token unless validation_token.nil?
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command.query['fields'] = fields unless fields.nil?
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command.query['quotaUser'] = quota_user unless quota_user.nil?
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execute_or_queue_command(command, &block)
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end
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# Lists pipelines. Caller must have READ permission to the project.
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# @param [String] name_prefix
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# Pipelines with names that match this prefix should be returned. If unspecified,
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# all pipelines in the project, up to `pageSize`, will be returned.
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# @param [Fixnum] page_size
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# Number of pipelines to return at once. Defaults to 256, and max is 2048.
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# @param [String] page_token
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# Token to use to indicate where to start getting results. If unspecified,
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# returns the first page of results.
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# @param [String] project_id
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# Required. The name of the project to search for pipelines. Caller must have
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# READ access to this project.
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# @param [String] fields
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# Selector specifying which fields to include in a partial response.
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# @param [String] quota_user
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# Available to use for quota purposes for server-side applications. Can be any
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# arbitrary string assigned to a user, but should not exceed 40 characters.
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# @param [Google::Apis::RequestOptions] options
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# Request-specific options
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#
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# @yield [result, err] Result & error if block supplied
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# @yieldparam result [Google::Apis::GenomicsV1alpha2::ListPipelinesResponse] parsed result object
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# @yieldparam err [StandardError] error object if request failed
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#
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# @return [Google::Apis::GenomicsV1alpha2::ListPipelinesResponse]
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#
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# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
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# @raise [Google::Apis::AuthorizationError] Authorization is required
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def list_pipelines(name_prefix: nil, page_size: nil, page_token: nil, project_id: nil, fields: nil, quota_user: nil, options: nil, &block)
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command = make_simple_command(:get, 'v1alpha2/pipelines', options)
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command.response_representation = Google::Apis::GenomicsV1alpha2::ListPipelinesResponse::Representation
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command.response_class = Google::Apis::GenomicsV1alpha2::ListPipelinesResponse
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command.query['namePrefix'] = name_prefix unless name_prefix.nil?
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command.query['pageSize'] = page_size unless page_size.nil?
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command.query['pageToken'] = page_token unless page_token.nil?
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command.query['projectId'] = project_id unless project_id.nil?
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command.query['fields'] = fields unless fields.nil?
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command.query['quotaUser'] = quota_user unless quota_user.nil?
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execute_or_queue_command(command, &block)
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end
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# Runs a pipeline. If `pipelineId` is specified in the request, then run a saved
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# pipeline. If `ephemeralPipeline` is specified, then run that pipeline once
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# without saving a copy. The caller must have READ permission to the project
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# where the pipeline is stored and WRITE permission to the project where the
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# pipeline will be run, as VMs will be created and storage will be used. If a
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# pipeline operation is still running after 6 days, it will be canceled.
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# @param [Google::Apis::GenomicsV1alpha2::RunPipelineRequest] run_pipeline_request_object
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# @param [String] fields
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# Selector specifying which fields to include in a partial response.
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# @param [String] quota_user
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# Available to use for quota purposes for server-side applications. Can be any
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# arbitrary string assigned to a user, but should not exceed 40 characters.
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# @param [Google::Apis::RequestOptions] options
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# Request-specific options
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#
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# @yield [result, err] Result & error if block supplied
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# @yieldparam result [Google::Apis::GenomicsV1alpha2::Operation] parsed result object
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# @yieldparam err [StandardError] error object if request failed
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#
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# @return [Google::Apis::GenomicsV1alpha2::Operation]
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#
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# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
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# @raise [Google::Apis::AuthorizationError] Authorization is required
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def run_pipeline(run_pipeline_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
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command = make_simple_command(:post, 'v1alpha2/pipelines:run', options)
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command.request_representation = Google::Apis::GenomicsV1alpha2::RunPipelineRequest::Representation
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command.request_object = run_pipeline_request_object
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command.response_representation = Google::Apis::GenomicsV1alpha2::Operation::Representation
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|
command.response_class = Google::Apis::GenomicsV1alpha2::Operation
|
|
command.query['fields'] = fields unless fields.nil?
|
|
command.query['quotaUser'] = quota_user unless quota_user.nil?
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|
execute_or_queue_command(command, &block)
|
|
end
|
|
|
|
# Sets status of a given operation. Any new timestamps (as determined by
|
|
# description) are appended to TimestampEvents. Should only be called by VMs
|
|
# created by the Pipelines Service and not by end users.
|
|
# @param [Google::Apis::GenomicsV1alpha2::SetOperationStatusRequest] set_operation_status_request_object
|
|
# @param [String] fields
|
|
# Selector specifying which fields to include in a partial response.
|
|
# @param [String] quota_user
|
|
# Available to use for quota purposes for server-side applications. Can be any
|
|
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
|
# @param [Google::Apis::RequestOptions] options
|
|
# Request-specific options
|
|
#
|
|
# @yield [result, err] Result & error if block supplied
|
|
# @yieldparam result [Google::Apis::GenomicsV1alpha2::Empty] parsed result object
|
|
# @yieldparam err [StandardError] error object if request failed
|
|
#
|
|
# @return [Google::Apis::GenomicsV1alpha2::Empty]
|
|
#
|
|
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
|
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
|
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
|
def set_pipeline_operation_status(set_operation_status_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
|
command = make_simple_command(:put, 'v1alpha2/pipelines:setOperationStatus', options)
|
|
command.request_representation = Google::Apis::GenomicsV1alpha2::SetOperationStatusRequest::Representation
|
|
command.request_object = set_operation_status_request_object
|
|
command.response_representation = Google::Apis::GenomicsV1alpha2::Empty::Representation
|
|
command.response_class = Google::Apis::GenomicsV1alpha2::Empty
|
|
command.query['fields'] = fields unless fields.nil?
|
|
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
|
execute_or_queue_command(command, &block)
|
|
end
|
|
|
|
protected
|
|
|
|
def apply_command_defaults(command)
|
|
command.query['key'] = key unless key.nil?
|
|
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
|
end
|
|
end
|
|
end
|
|
end
|
|
end
|