cancer_predict/app/controllers/cancerpredicts_controller.rb

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2019-11-15 09:02:17 +00:00
# encoding: utf-8
require 'rubyXL'
class CancerpredictsController < ApplicationController
def initialize
super
@app_title = "cancerpredict"
end
def calculate
create_first_field
#begin
if params['header'].to_i == 1
locale = params['locale'].to_s rescue 'zh_tw'
locale = 'zh_tw' if locale == 'zh_cn'
result = {}
@head_images = {}
@form_to_show.head_images_id.each do |image_id|
next if image_id.to_s == ""
@image = Headimages.find_by(:id=>image_id.to_s)
@url = @image.temp_file.to_s
@head_images[@image.sort_number.to_i] = ('<img class="head_logo" alt ="' + Pathname.new(@image.temp_file.file.file).basename.to_s+'" src="'+@url+'"/>')
end
result['head_images'] = Hash[@head_images.sort].values.join('')
@head_images = {}
@form_to_show.title_images_id.each do |image_id|
next if image_id.to_s == ""
@image = Headimages.find_by(:id=>image_id.to_s)
@url = @image.temp_file.to_s
@head_images[@image.sort_number.to_i] = ('<img class="head_logo" alt ="' + Pathname.new(@image.temp_file.file.file).basename.to_s+'" src="'+@url+'"/>')
end
result['danger_texts'] = (@form_to_show.danger_texts[locale] rescue '')
result['title'] = Hash[@head_images.sort].values.join('')
result['page_title'] = @form_to_show.title_texts[params[:locale]]
elsif params['get_mapping_data_from_csv'].to_i == 1
result = {}
result['mapping_data_from_csv'] = YAML.load(@form_to_show.mapping_data_from_csv) rescue {}
else
@record = Cancerpredictrecord.new
@record.title = @app_title
@choice_keys = []
@choice_values = []
@choice_names = []
@form_to_show.form_show.values.each{|choice| @choice_keys.push choice[:variable]}
@form_to_show.form_show.values.each{|choice| @choice_values.push choice[:choice_fields]}
@form_to_show.form_show.values.each{|choice| @choice_names.push choice[:name]}
@choice_keys.each_with_index{|key,i| @record.names[key] = @choice_names[i]}
@choice_keys.each_with_index{|key,i| @record.values[key] = @choice_values[i]}
params['data'].each do |rec_key,rec_value|
@record.result[rec_key] = rec_value
end
@record.submit_time = Time.now.to_s
@record.save
locale = params['data']['locale'].to_s rescue 'zh_tw'
locale = 'zh_tw' if locale == 'zh_cn'
result = {}
# result['sex_value'] = params['data']['sex'].to_i - 1
# result['Age_value'] = params['data']['age'].to_i
# if params['data']['calcification_score'].to_i < 1400
# result['cal_value'] = 0
# else
# result['cal_value'] = 1
# end
mapping_data_from_csv = YAML.load(@form_to_show.mapping_data_from_csv) rescue {}
@form_to_show.form_show.each do |num,property|
@variable = property[:variable]
if @variable.present?
if property[:is_num] == 1
result[@variable] = params['data'][@variable].to_f rescue 0.0
elsif property[:choice_fields].present?
if property[:map_values].class == Array && property[:choice_fields].class == Array && property[:map_values].length == property[:choice_fields].length
result[@variable] = property[:map_values][params['data'][@variable].to_i - 1]
else
if property[:revert_value].to_i != 1
result[@variable] = params['data'][@variable].to_i - 1
else
result[@variable] = ((property[:choice_fields].length - params['data'][@variable].to_i) rescue params['data'][@variable].to_i)
end
end
end
if property[:cancer_predict_mapping_file].present?
if (mapping_data_from_csv != {})
mapping_hash = mapping_data_from_csv[@variable]
temp_index = 0
temp_value = result[@variable]
mapping_hash.each_with_index do |(k,v),i|
if i == 0
index_val = v.index(temp_value) rescue nil
if !index_val.nil?
temp_index = index_val
else
closest_value = v.min_by{|x| (temp_value-x).abs}
temp_index = v.index(closest_value)
end
end
result[k] = v[temp_index]
end
end
end
end
end
#result['lpv'] = -0.51427548* (result['sex_value']- 0.508312) + 0.05764604* (result['Age_value'] - 61.894501) + 0.49138819*(result['cal_value'] - 0.334399) rescue 'error'
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formula = @form_to_show.tmp_lpv_ruby_code
formula_variables = @form_to_show.tmp_lpv_variables_ruby_code
eval(formula)
result['lpv'] = eval(formula_variables.last)
result['lpv_variable'] = {}
formula_variables.each do |variable_name|
eval( "result['lpv_variable']['#{variable_name}'] = #{variable_name}" )
end
@years = @form_to_show.years
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result['table'] = '<input id="current_year" type="hidden" value="'+@years[0].to_s+'" index="0"/><p id="cancer_table_texts">'+@form_to_show.table_above_texts[locale].to_s+'</p>'
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result['table'] += ('<a style="display: inline-block;">'+(locale == 'zh_tw' ? '第' : '')+'</a><a style="display: inline-block;">')
result['years'] = @years
@years.each{|year| result['table'] += ('<button class="cancer_years cancer_table_btn btn btn-default btn-sm">'+year.to_s+'</button>')}
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result['table'] += ('</a><a style="display: inline-block;">'+(locale == 'zh_tw' ? '年' : '')+'</a>')
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#@head_name = ['Treatment','Additional_Benefit','Overall_Survival']
@head_name = ['Treatment','Overall_Survival']
@table_head = @head_name.map{|name| I18n.t('cancerpredict.table.'+name)}
@therapy_choices = [I18n.t('cancerpredict.table.Surgeryonly')]
@form_to_show.form_show_in_result.values.each{|choice| @therapy_choices.push choice["name"][locale]}
@therapy_names = ['Surgery_only']
@form_to_show.form_show_in_result.values.each{|choice| @therapy_names.push choice["variable"]}
result['treatmeny_method'] = @therapy_names
result['table'] += '<table><thead><tr>'
@table_head.each_with_index{|head,index| result['table'] += ('<th class="cancer_th '+@head_name[index]+'">' + head + '</th>')}
result['table'] += '</tr></thead><tbody>'
@therapy_choices.each_with_index do |choice,i|
result['table'] += '<tr class="'+@therapy_names[i].to_s+'">'
@table_head.each_with_index do |head,index|
result['table'] += ('<td class="cancer_td '+ @head_name[index]+'">' + ((index == 0) ? (((i==0)? '' : '+') + choice) : '-') + '</td>')
end
result['table'] += '</tr>'
end
year = params['data']['year'] rescue nil
if year.nil?
year = @years.first.to_f
else
year = year.to_f
end
year_index = @years.index(year)
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@servive_ratio = eval(@form_to_show.tmp_years_settings[year_index])
@servive_ratio = ((1 - @servive_ratio) * 100).round(2)
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@texts = @form_to_show.text_above_texts[locale].to_s.gsub('<br/>','</span><br/><span>').gsub('{{Surgery_only}}','<span class="'+@therapy_names[0]+' Overall_Survival">'+@servive_ratio.round(2).to_s+'</span>')
@texts = @texts.split('{{years}}')
@texts.delete('')
result['texts'] = '<span>'+@texts[0]
@years.each{|year| result['texts'] += ('<button class="cancer_years cancer_table_btn btn btn-default btn-sm" style="float:none;">'+year.to_s+'</button>')}
if @texts.count > 1
result['texts'] += (@texts[1]+'</span>') if @texts.count > 1
else
result['texts'] += '</span>'
end
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if !@form_to_show.surgery_only_texts[locale].blank?
@surgery_only_texts = @form_to_show.surgery_only_texts[locale]
@surgery_only_texts.insert(0,'<p class="show"><span>')
@surgery_only_texts = @surgery_only_texts.gsub('{{Surgery_only}}','<span class="'+@therapy_names[0]+' Overall_Survival">'+@servive_ratio.round.to_s+'</span><span>')
@surgery_only_texts = @surgery_only_texts.gsub('{{surgery_year}}','</span><span class="surgery_year">'+@years[-1].to_s+'</span><span>')
@surgery_only_texts += '</span>'
else
@surgery_only_texts = ''
end
result['texts'] += @surgery_only_texts
result['texts'] += '<span class="addition">'+@form_to_show.extra_texts[locale]+'</span><div class="extra-text" style="display:none;"><div class="texts_show" style="clear:both;"></div></div></p>'
result['extra_therapy_texts'] = @form_to_show.extra_therapy_texts[locale] rescue @form_to_show.extra_therapy_texts['zh_tw']
result['servive_ratio'] = @servive_ratio
end
result = result.merge(params)
render :json=> result
# rescue
# render :json=> params
#end
end
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def index
uid = OrbitHelper.params[:uid] rescue ""
tags = OrbitHelper.widget_tags
categories = OrbitHelper.widget_categories || []
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@table_str = File.read('public/cancer_tool_table_tmp_'+I18n.locale.to_s+'.txt')
{
"cancerpredict" => [],
"extras"=>{"table"=> @table_str}
}
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end
def widget
uid = OrbitHelper.params[:uid] rescue ""
tags = OrbitHelper.widget_tags
categories = OrbitHelper.widget_categories || []
end
def create_first_field
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if Cancerpredictfields.where("title"=>(@app_title + "_back")).count == 0
@form_to_show = Cancerpredictfields.new()
@form_to_show.title = @app_title +"_back"
@form_to_show.save
end
@form_to_show
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if Cancerpredictfields.where("title"=>@app_title).count == 0
@form_to_show = Cancerpredictfields.new()
@form_to_show.title=@app_title
@form_to_show.save
@form_to_show = Cancerpredictfields.where("title"=>@app_title).first
else
@form_to_show = Cancerpredictfields.where("title"=>@app_title).first
end
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end
def read_mapping_file(mapping_file)
if mapping_file.class != CancerPredictMappingFile
mapping_file = CancerPredictMappingFile.find(mapping_file_id) rescue nil
end
if !mapping_file.nil?
csv_rows = CSV.read(mapping_file.temp_file.file.path)
titles = csv_rows[0]
infos = {}
titles.each_with_index do |title,i|
infos[title] = []
csv_rows[1..-1].each do |row|
infos[title] << row[i].to_f
end
end
return infos
else
return {}
end
end
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end