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cancer_predict
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add a lot of things

This commit is contained in:
BOHUNG 2019-11-23 16:14:56 +08:00
parent 88b5a9bbed
commit 741d440631
7 changed files with 120 additions and 246 deletions
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1
app/assets/javascripts/cancer_predict.js Normal file
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@ -0,0 +1 @@
$('.cancer_help_btn')

30
app/controllers/admin/cancerpredicts_controller.rb
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@ -19,20 +19,22 @@ class Admin::CancerpredictsController < OrbitAdminController
render :partial => "index"
end
end
def edit
end
def create_first_field
if Cancerpredictfields.where("title"=>(@app_title + "_back")).take_while{true}.count == 0
@form_to_show = Cancerpredictfields.new()
@form_to_show.title = @app_title +"_back"
@form_to_show.save
end
@form_to_show
if Cancerpredictfields.where("title"=>@app_title).take_while{true}.count == 0
@form_to_show = Cancerpredictfields.new()
@form_to_show.title=@app_title
@form_to_show.save
@form_to_show = Cancerpredictfields.where("title"=>@app_title).first
else
@form_to_show = Cancerpredictfields.where("title"=>@app_title).first
end
if Cancerpredictfields.where("title"=>(@app_title + "_back")).take_while{true}.count == 0
@form_to_show = Cancerpredictfields.new()
@form_to_show.title = @app_title +"_back"
@form_to_show.save
end
@form_to_show
if Cancerpredictfields.where("title"=>@app_title).take_while{true}.count == 0
@form_to_show = Cancerpredictfields.new()
@form_to_show.title=@app_title
@form_to_show.save
@form_to_show = Cancerpredictfields.where("title"=>@app_title).first
else
@form_to_show = Cancerpredictfields.where("title"=>@app_title).first
end
end
end

24
app/controllers/cancerpredict_controller.rb
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@ -1,24 +0,0 @@
# encoding: utf-8
require 'rubyXL'
class CancerpredictsController < ApplicationController
before_filter :set_I18n
before_action ->(module_app = @app_title) { set_variables module_app }
#before_action :load_access_levels
def initialize
super
@app_title = "cancerpredict"
end
def index
@tags = @module_app.tags
@categories = @module_app.categories.enabled
@filter_fields = filter_fields(@categories, @tags)
@table_fields = [:status, :category, :title, :start_date, :end_date, :last_modified]
if request.xhr?
render :partial => "index"
end
end
def set_I18n
I18n.locale = params[:lang] if params[:lang].present?
end
end

61
app/controllers/cancerpredicts_controller.rb
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@ -1,9 +1,6 @@
# encoding: utf-8
require 'rubyXL'
class CancerpredictsController < ApplicationController
before_filter :set_I18n
before_action ->(module_app = @app_title) { set_variables module_app }
#before_action :load_access_levels
def initialize
super
@app_title = "cancerpredict"
@ -14,6 +11,47 @@ class CancerpredictsController < ApplicationController
tags = OrbitHelper.widget_tags
categories = OrbitHelper.widget_categories || []
locale = OrbitHelper.get_site_locale.to_s
@table_str = '<div id="cancer_table">'
create_first_field
@form_to_show.form_show.each do |num,property|
@table_str += '<div data-key='+num.to_s+'>'
@field_property = {}
property.each do |key,value|
@value= value
if @value.class == BSON::Document || @value.class == Hash
@disp_value = @value[I18n.locale.to_s] rescue ""
else
@disp_value = @value
end
@field_property[key] = @disp_value
end
break if @field_property["name"] == ""
@table_str += '<label for="'+@field_property["variable"]+'" style="float:left;" class="cencer_table_name">'
@table_str += @field_property["name"]
@table_str += '</label>'
if @field_property["comment_text"] != ""
@table_str += '<button tabindex="0" class="cancer_help_btn" data-target="#show_help_modal" style="float:left;"></button>'
end
if @field_property["is_num"] == 1
@table_str += '<input class="num_only" id="'+@field_property["variable"]+'" style="float:left;clear:right;"></input>'
else
@table_str += '<div id="'+@field_property["variable"]+'" style="float:left;clear:right;">'
@field_property["choice_fields"].each do |create_choice|
@table_str += '<button class="cancer_table_btn">'+create_choice+'</button>'
@table_str += '<input type="hidden" value="0" name="'+create_choice+'"></input>'
end
@table_str += ''
end
if @field_property["hint"].to_s != ""
@table_str +='<div style="color: rgb(104, 104, 104);font-size:0.75em;clear:both;">'+@field_property["hint"]+'</div>'
end
@table_str += '</div><div style="clear:both;"></div>'
end
@table_str+='</div>'
{
"cancerpredict" => [],
"extras"=>{"table"=> @table_str}
}
end
def widget
uid = OrbitHelper.params[:uid] rescue ""
@ -21,7 +59,20 @@ class CancerpredictsController < ApplicationController
categories = OrbitHelper.widget_categories || []
locale = OrbitHelper.get_site_locale.to_s
end
def set_I18n
I18n.locale = params[:lang] if params[:lang].present?
def create_first_field
if Cancerpredictfields.where("title"=>(@app_title + "_back")).take_while{true}.count == 0
@form_to_show = Cancerpredictfields.new()
@form_to_show.title = @app_title +"_back"
@form_to_show.save
end
@form_to_show
if Cancerpredictfields.where("title"=>@app_title).take_while{true}.count == 0
@form_to_show = Cancerpredictfields.new()
@form_to_show.title=@app_title
@form_to_show.save
@form_to_show = Cancerpredictfields.where("title"=>@app_title).first
else
@form_to_show = Cancerpredictfields.where("title"=>@app_title).first
end
end
end

28
app/models/cancerpredictfields.rb
View File

@ -7,30 +7,18 @@ class Cancerpredictfields
include OrbitTag::Taggable
include OrbitCategory::Categorizable
field :title ,type:String ,default:""
field :form_show , :type=> Hash ,default:{"cancer_form"=>{:names=>{0=>{:variable=>"age",:name=>{"zh_tw"=>"年齡","en"=>"age"},:is_num=>1,:hint=>{'zh_tw'=>'從 18 歲(含)開始至 93 歲','en'=>}, :comment_text=>{'zh_tw'=>'年齡為該婦女於確診罹患乳癌時之年齡','en'=>''}, :fields=> {"zh_tw"=>[],"en"=>[]},range=[18,93]},
1=>{:variable=>"size",:name=>{"zh_tw"=>"腫瘤大小","en"=>"tumor size"},:is_num=>1,:hint=>{'zh_tw'=>'','en'=>''}, :comment_text=>{'zh_tw'=>'若有多個原發腫瘤，請輸入最大尺寸之原發腫瘤','en'=>''}, :fields=> {"zh_tw"=>[],"en"=>[]},range=[1]},
2=>{:variable=>"ratio",:name=>{"zh_tw"=>"淋巴結陽性比例","en"=>"node-positive ratio"},:is_num=>1,:hint=>{'zh_tw'=>'','en'=>''}, :comment_text=>{'zh_tw'=>'','en'=>''}, :fields=> {"zh_tw"=>[],"en"=>[]},range=[0,1]},
3=>{:variable=>"grade",:name=>{"zh_tw"=>"腫瘤級數","en"=>"tumor grade"},:is_num=>0,:hint=>{'zh_tw'=>'','en'=>''}, :comment_text=>{'zh_tw'=>'腫瘤級數代表腫瘤組織與正常組織間的分化程度，若無分化級數資訊，請選擇“未知”選項，將以級數 1 進行預測。','en'=>''}, :fields=> {"zh_tw"=>['1','2','3','未知'],"en"=>['1','2','3','unknown']},range=[0,1]},
4=>{:variable=>"subtype",:name=>{"zh_tw"=>"乳癌分型","en"=>"breast cancer subtype"},:is_num=>0,:hint=>{'zh_tw'=>'','en'=>''}, :comment_text=>{'zh_tw'=>'若無分型資訊，請選擇“未知”選項，將以佔多數比例的管腔類進行預測。','en'=>''}, :fields=> {"zh_tw"=>['分管腔類','人類第二型表皮接受體','三陰型','未知'],"en"=>['Luminal-like','HER2','Triple negative','unknown']},range=[0,1]},
5=>{:variable=>"pstage",:name=>{"zh_tw"=>"病理分期","en"=>"pathologic stage"},:is_num=>0,:hint=>{'zh_tw'=>'','en'=>''}, :comment_text=>{'zh_tw'=>'若無分期資訊，請選擇“未知”選項，將以病理分期第 1 期進行預測。','en'=>''}, :fields=> {"zh_tw"=>['1','2','3','4','未知'],"en"=>['1','2','3','4','unknown']},range=[0,1]},
6=>{:variable=>"lvi",:name=>{"zh_tw"=>"淋巴管或血管侵犯","en"=>"lymph vessel or vascular invasion, LVI"},:is_num=>0,:hint=>{'zh_tw'=>'','en'=>''}, :comment_text=>{'zh_tw'=>'若無淋巴管或血管侵犯資訊，請選擇“未知”選項，將以佔多數比例的淋巴管或血管未侵犯進行預測','en'=>''}, :fields=> {"zh_tw"=>['是','否','未知'],"en"=>['yes','no','unknown']},range=[0,1]},
}},
field :form_show , :type=> Hash ,default:{0=>{:variable=>"age",:name=>{"zh_tw"=>"年齡","en"=>"age"},:is_num=>1, :hint=>{'zh_tw'=>'從 18 歲(含)開始至 93 歲','en'=>''} , :comment_text=>{'zh_tw'=>'年齡為該婦女於確診罹患乳癌時之年齡','en'=>''}, :choice_fields=> {"zh_tw"=>[],"en"=>[]},:range=>[18,93]},
1=>{:variable=>"size",:name=>{"zh_tw"=>"腫瘤大小","en"=>"tumor size"},:is_num=>1,:hint=>{'zh_tw'=>'','en'=>''}, :comment_text=>{'zh_tw'=>'若有多個原發腫瘤，請輸入最大尺寸之原發腫瘤','en'=>''}, :choice_fields=> {"zh_tw"=>[],"en"=>[]},:range=>[1]},
2=>{:variable=>"ratio",:name=>{"zh_tw"=>"淋巴結陽性比例","en"=>"node-positive ratio"},:is_num=>1,:hint=>{'zh_tw'=>'','en'=>''}, :comment_text=>{'zh_tw'=>'','en'=>''}, :choice_fields=> {"zh_tw"=>[],"en"=>[]},:range=>[0,1]},
3=>{:variable=>"grade",:name=>{"zh_tw"=>"腫瘤級數","en"=>"tumor grade"},:is_num=>0,:hint=>{'zh_tw'=>'','en'=>''}, :comment_text=>{'zh_tw'=>'腫瘤級數代表腫瘤組織與正常組織間的分化程度，若無分化級數資訊，請選擇“未知”選項，將以級數 1 進行預測。','en'=>''}, :choice_fields=> {"zh_tw"=>['1','2','3','未知'],"en"=>['1','2','3','unknown']},:range=>[]},
4=>{:variable=>"subtype",:name=>{"zh_tw"=>"乳癌分型","en"=>"breast cancer subtype"},:is_num=>0,:hint=>{'zh_tw'=>'','en'=>''}, :comment_text=>{'zh_tw'=>'若無分型資訊，請選擇“未知”選項，將以佔多數比例的管腔類進行預測。','en'=>''}, :choice_fields=> {"zh_tw"=>['分管腔類','人類第二型表皮接受體','三陰型','未知'],"en"=>['Luminal-like','HER2','Triple negative','unknown']},:range=>[]},
5=>{:variable=>"pstage",:name=>{"zh_tw"=>"病理分期","en"=>"pathologic stage"},:is_num=>0,:hint=>{'zh_tw'=>'','en'=>''}, :comment_text=>{'zh_tw'=>'若無分期資訊，請選擇“未知”選項，將以病理分期第 1 期進行預測。','en'=>''}, :choice_fields=> {"zh_tw"=>['1','2','3','4','未知'],"en"=>['1','2','3','4','unknown']},:range=>[]},
6=>{:variable=>"lvi",:name=>{"zh_tw"=>"淋巴管或血管侵犯","en"=>"lymph vessel or vascular invasion, LVI"},:is_num=>0,:hint=>{'zh_tw'=>'','en'=>''}, :comment_text=>{'zh_tw'=>'若無淋巴管或血管侵犯資訊，請選擇“未知”選項，將以佔多數比例的淋巴管或血管未侵犯進行預測','en'=>''}, :choice_fields=> {"zh_tw"=>['是','否','未知'],"en"=>['yes','no','unknown']},:range=>[]}
}
# before_destroy :destroy_email
scope :can_display, ->{where(:is_hidden=>false,:is_preview => false).any_of({:postdate.lt=>Time.now, :deadline.gt=>Time.now},{:postdate.lt=>Time.now, :deadline=>nil}).order_by([:is_top, :desc],[:postdate, :desc])}
scope :is_approved, ->{where(:approved => true)}
before_create :delete_empty_font ,:get_font_to_store,:set_un_used_font , :set_used_font
before_update :delete_empty_font ,:get_font_to_store,:set_un_used_font , :set_used_font
before_save :delete_empty_font ,:get_font_to_store,:set_un_used_font , :set_used_font
after_update :set_config
after_save :set_config
#before_create :set_expire
def delete_empty_font
self.font_array.each do |font,istrue|
if font.strip == ""
self.font_array.delete(font)
end
end
end
def update_user
User.find(update_user_id) rescue nil
end

220
app/views/admin/cancerpredicts/index.html.erb
View File

@ -1,35 +1,45 @@
<div style="clear:both;"></div>
<% @i = 0 %>
<button id="clickall"><%= (I18n.locale.to_s == "zh_tw") ? "全選" : "select all" %></button>
<button id="unclickall"><%= (I18n.locale.to_s == "zh_tw") ? "取消全選" : "unselect all" %></button>
<%=form_for @form_to_show ,:url=>{:controller=>"patchfiles" ,:action=>"edit"} do |file|%>
<%= file.fields_for :file_show do |filefield|%>
<div id="forms">
<% @form_to_show.file_show.each do |name,property| %>
<table>
<thead>
<tr>
<% @form_to_show.form_show.values[1].each do |key,vlaue|%>
<th><%=key%></th>
<%end%>
</tr>
</thead>
<%=form_for @form_to_show ,:url=>{:controller=>"cancerpredicts" ,:action=>"edit"} do |form|%>
<tbody>
<%= form.fields_for :form_show do |formfield|%>
<% @form_to_show.form_show.each do |num,property| %>
<tr>
<% property.each do |key,value|%>
<% @value= value %>
<% if @value.class == BSON::Document || @value.class == Hash %>
<% @disp_value = @value[I18n.locale.to_s] rescue "" %>
<%else%>
<%Fixnum%>
<% @disp_value = @value %>
<%end%>
<td><%= formfield.text_field key,{:value=>@disp_value}%></td>
<%end%>
</tr>
<%end%>
<%end%>
</div>
</tbody>
<%end%>
<%=file.text_field :recovery_btn, {:id=>"hidden-recovery",:type => "hidden",:value=>"false"} %>
<%=file.text_field :refresh_btn, {:id=>"hidden-refresh",:type => "hidden",:value=>"false"} %>
<button id="seemessage" onclick="return seelogfcn()"><%=(I18n.locale.to_s =="zh_tw") ? "查看上次更新的logs" : "see logs of prev update "%></button>
<button id="recoverybtn" onclick="return recoveryfcn()"><%=(I18n.locale.to_s =="zh_tw") ? "復原到上次更新的檔案狀態" : "recovery to prev file status"%></button>
<button id="destroy_mongofield" onclick="return destroy_mongofield_fcn()"><%=(I18n.locale.to_s =="zh_tw") ? "刷新可更新的檔案狀態" : "refresh the status of the update files"%></button>
<%end%>
<a>網站目錄根路徑:<%=Dir.pwd.to_s%></a>
<li id ="ckeditorFont" class="show_li">
<a title="CKEDITOR現有字形">CKEDITOR現有字形</a>
<% @ckicktosee_str = (I18n.locale.to_s == "en") ? "click me to see all font which CKEDITOR have now" : "點擊我來查看編輯器所有目前擁有的字形" %>
<a id="clicktosee" title="<%= @ckicktosee_str %>" class="Toggleclass"><%= @ckicktosee_str %></a>
<ul>
<% @font_array.each do |font|%>
<li><a title="<%= font %>"><%= font %></a></li>
<%end%>
</ul>
</li>
<a></a>
</table>
<style type="text/css">
thead > tr > th{
border:1px solid;
background: bisque;
}
tbody{
background:white;
}
tbody > tr > td{
border:1px solid;
}
.show_li,.show_li *{
list-style:none;
color:balck;
@ -41,158 +51,4 @@
color:blue;
cursor:pointer;
}
</style>
<script>
$('.Toggleclass').off("click").on("click",function(){
$(this).parent().find(">ul").slideToggle();
});
$('.checkbox').off('click').on('click',function(){
for(var i = 0;i<$(this).parent().find('.sub_checkbox').length;i++){
if($(this).is(":checked") == false){
if($(this).parent().find('.sub_checkbox').eq(i).is(":checked") == true)
$(this).parent().find('.sub_checkbox').eq(i).click();
}else{
if($(this).parent().find('.sub_checkbox').eq(i).is(":checked") == false)
$(this).parent().find('.sub_checkbox').eq(i).click();
};
};
});
$('.sub_checkbox').off('click').on('click',function(){
var num = 0;
var index = 0;
for(var i = 0;i<$(this).parent().find('.sub_checkbox').length;i++){
if($(this).parent().find('.sub_checkbox').eq(i).is(":checked") == true){
num += 1;
};
};
if( num == $(this).parent().find('.sub_checkbox').length){
if( $(this).parent().find('.checkbox').is(":checked") == false)
$(this).parent().find('.checkbox').click();
}else{
if( $(this).parent().find('.checkbox').is(":checked") == true){
$(this).parent().find('.checkbox').click();
for(var i = 0;i<$(this).parent().find('.sub_checkbox').length;i++){
if($(this).parent().find('.sub_checkbox').eq(i).attr('id') != $(this).attr('id'))
$(this).parent().find('.sub_checkbox').eq(i).click();
}
};
}
});
$("#clickall").off("click").on("click",function(){
for(var i =0;i<$(".sub_checkbox").length ; i++){
if($(".checkbox").eq(i).is(":checked") == false)
$(".checkbox").eq(i).click();
}
});
$("#unclickall").off("click").on("click",function(){
for(var i =0;i<$(".sub_checkbox").length ; i++){
if($(".checkbox").eq(i).is(":checked") == true)
$(".checkbox").eq(i).click();
}
});
function seelogfcn(){
if($( "#dialog-confirm" ).length != 0)
$( "#dialog-confirm" ).remove();
if(I18n.locale == "zh_tw"){
$('body').after("<div id='dialog-confirm' title='上次更新的logs'></div>");
}else{
$('body').after("<div id='dialog-confirm' title='logs of prev update？'></div>");
};
$( "#dialog-confirm" ).append($.parseHTML("<%= @form_to_show.last_message.gsub("\"","\'").html_safe %>"));
$( "#dialog-confirm" ).dialog({
resizable: true,
height:200,
modal: true,
buttons: {
<%=(I18n.locale == "zh_tw") ? "確認" : "confirm"%>: function(){
$( this ).dialog( "close" );
},
<%=(I18n.locale == "zh_tw") ? "取消" : "Cancel"%>: function() {
$( this ).dialog( "close" );
}
}
});
return false;
};
function updatefcn(){
var str="";
var num =1;
for(var i =0;i<$(".sub_checkbox").length ; i++){
if($(".sub_checkbox").eq(i).is(":checked") == true){
str += ("</br><i style='color:red;'>"+num+". "+$(".sub_checklabel").eq(i).html()+"</i>");
num += 1;
}
}
if($( "#dialog-confirm" ).length != 0)
$( "#dialog-confirm" ).remove();
if(I18n.locale == "zh_tw"){
$('body').after("<div id='dialog-confirm' title='你確定要更新嗎？'>"+
"<p><span class='ui-icon ui-icon-alert' style='float:left; margin:0 7px 0 0;'></span>"+
"按下確認鍵後，你將更新你所選的檔案。"+str+"</p>"
+"</div>");
}else{
$('body').after("<div id='dialog-confirm' title='Are you sure to update？'>"+
"<p><span class='ui-icon ui-icon-alert' style='float:left; margin:0 7px 0 0;'></span>"+
"After click confirm button,you will update the selected file."+str+"</p>"
+"</div>");
};
$( "#dialog-confirm" ).dialog({
resizable: true,
height:200,
modal: true,
buttons: {
<%=(I18n.locale == "zh_tw") ? "確認" : "confirm"%>: function(){
$( this ).dialog( "close" );
$('.edit_filefield').submit();
},
<%=(I18n.locale == "zh_tw") ? "取消" : "Cancel"%>: function() {
$( this ).dialog( "close" );
}
}
});
return false;
};
function recoveryfcn(){
var str="";
var num =1;
for(var i =0;i<$(".sub_checkbox").length ; i++){
if($(".sub_checkbox").eq(i).is(":checked") == true){
str += ("</br><i style='color:red;'>"+num+". "+$(".sub_checklabel").eq(i).html()+"</i>");
num += 1;
}
}
if($( "#dialog-confirm" ).length != 0)
$( "#dialog-confirm" ).remove();
if(I18n.locale == "zh_tw"){
$('body').after("<div id='dialog-confirm' title='你確定要還原嗎？'>"+
"<p><span class='ui-icon ui-icon-alert' style='float:left; margin:0 7px 0 0;'></span>"+
"按下確認鍵後，你將還原你所選的檔案。"+str+"</p>"
+"</div>");
}else{
$('body').after("<div id='dialog-confirm' title='Are you sure to recover？'>"+
"<p><span class='ui-icon ui-icon-alert' style='float:left; margin:0 7px 0 0;'></span>"+
"After click confirm button,you will recover the selected file."+str+"</p>"
+"</div>");
}
$( "#dialog-confirm" ).dialog({
resizable: true,
height:200,
modal: true,
buttons: {
<%=(I18n.locale == "zh_tw") ? "確認" : "confirm"%>: function(){
$('#hidden-recovery').val("true");
$( this ).dialog( "close" );
$('.edit_filefield').submit();
},
<%=(I18n.locale == "zh_tw") ? "取消" : "Cancel"%>: function() {
$('#hidden-recovery').val("false");
$( this ).dialog( "close" );
}
}
});
return false;
};
function destroy_mongofield_fcn(){
$('#hidden-refresh').val('true');
};
</script>
</style>

2
config/routes.rb
View File

@ -5,7 +5,7 @@ Rails.application.routes.draw do
scope "(:locale)", locale: Regexp.new(locales.join("|")) do
namespace :admin do
get 'cancerpredicts' , to: 'cancerpredicts#index'
get 'editCancerpredicts' , to: 'cancerpredicts#edit'
resources :cancerpredicts
end
end