383 lines
21 KiB
Ruby
383 lines
21 KiB
Ruby
# encoding: utf-8
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require 'rubyXL'
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class CancerpredictsController < ApplicationController
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def initialize
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super
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@app_title = "cancerpredict"
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end
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def calculate
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uid = OrbitHelper.params[:uid] rescue ""
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tags = OrbitHelper.widget_tags
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categories = OrbitHelper.widget_categories || []
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create_first_field
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#begin
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if params['header'].to_i == 1
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result = {}
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@head_images = {}
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@form_to_show.head_images_id.each do |image_id|
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next if image_id.to_s == ""
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@image = Headimages.find_by(:id=>image_id.to_s)
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@url = @image.temp_file.to_s
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@head_images[@image.sort_number.to_i] = ('<img class="head_logo" alt ="' + Pathname.new(@image.temp_file.file.file).basename.to_s+'" src="'+@url+'\"/>')
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end
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result['head_images'] = Hash[@head_images.sort].values.join('')
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@head_images = {}
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@form_to_show.title_images_id.each do |image_id|
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next if image_id.to_s == ""
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@image = Headimages.find_by(:id=>image_id.to_s)
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@url = @image.temp_file.to_s
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@head_images[@image.sort_number.to_i] = ('<img class="head_logo" alt ="' + Pathname.new(@image.temp_file.file.file).basename.to_s+'" src="'+@url+'\"/>')
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end
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result['title'] = ((@form_to_show.title_texts == "") ? "" : '<a class="title_texts">'+@form_to_show.title_texts+'</a>')+Hash[@head_images.sort].values.join('')
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else
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@record = Cancerpredictrecord.new
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@record.title = @app_title
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@choice_keys = []
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@choice_values = []
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@choice_names = []
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@form_to_show.form_show.values.each{|choice| @choice_keys.push choice[:variable]}
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@form_to_show.form_show.values.each{|choice| @choice_values.push choice[:choice_fields]}
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@form_to_show.form_show.values.each{|choice| @choice_names.push choice[:name]}
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@choice_keys.each_with_index{|key,i| @record.names[key] = @choice_names[i]}
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@choice_keys.each_with_index{|key,i| @record.values[key] = @choice_values[i]}
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params['data'].each do |rec_key,rec_value|
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@record.result[rec_key] = rec_value
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end
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@record.submit_time = Time.now.to_s
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@record.save
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locale = params['data']['locale'].to_s rescue 'zh_tw'
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locale = 'zh_tw' if locale == 'zh_cn'
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result = {}
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result['age1'] = (params['data']['age'].to_f/100)**(0.5)
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result['age2'] = ((params['data']['age'].to_f/100)**(0.5))*Math.log(params['data']['age'].to_f/100,Math.exp(1))
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result['size1'] = Math.log(params['data']['size'].to_f/10,Math.exp(1))
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result['ratio'] = params['data']['lymph_nodes_positive'].to_f/params['data']['lymph_nodes_examined'].to_f rescue 0
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result['ratio'] = 1 if result['ratio'] > 1
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result['nposit'] = ((result['ratio'].to_f+0.1)/0.1)**0.5
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@T = ''
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if params['data']['tumor_direct_extension'].to_i != 1
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if params['data']['size'].to_i <= 20
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@T = 'T1'
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elsif params['data']['size'].to_i > 20 && params['data']['size'].to_i <= 50
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@T = 'T2'
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elsif params['data']['size'].to_i > 50
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@T = 'T3'
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end
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else
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@T = 'T4'
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end
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@N = ''
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if params['data']['lymph_nodes_positive'].to_i == 0
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@N = 'N0'
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elsif params['data']['lymph_nodes_positive'].to_i >= 1 && params['data']['lymph_nodes_positive'].to_i <= 3 && params['data']['micrometastasis'].to_i != 1
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@N = 'N1'
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elsif params['data']['lymph_nodes_positive'].to_i >= 1 && params['data']['lymph_nodes_positive'].to_i <= 3 && params['data']['micrometastasis'].to_i == 1
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@N = 'N1mi'
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elsif params['data']['lymph_nodes_positive'].to_i >= 4 && params['data']['lymph_nodes_positive'].to_i <= 9
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@N = 'N2'
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elsif params['data']['lymph_nodes_positive'].to_i >= 10
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@N = 'N3'
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end
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@M = ''
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if params['data']['Distant_Metastasis'].to_i != 1
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@M = 'M0'
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else
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@M = 'M1'
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end
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if @M == 'M0'
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if @T == 'T1' && (@N == 'N0' || @N == 'N1mi')
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result['pstage'] = 1
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elsif ((@T == 'T2' || @T == 'T3') && (@N == 'N0')) || ((@T == 'T1' || @T == 'T2') && (@N == 'N1'))
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result['pstage'] = 2
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elsif (@T == 'T4' && @N == 'N0') || ((@T == 'T3' || @T == 'T4') && @N == 'N1') || (@N == 'N2' || @N == 'N3')
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result['pstage'] = 3
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end
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else
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result['pstage'] = 4
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end
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if (params['data']['ER_status'].to_i != 2 || params['data']['PR_status'].to_i != 2) && (params['data']['HER2_status'].to_i != 1)
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result['subtype'] = 1
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elsif params['data']['ER_status'].to_i == 2 && params['data']['PR_status'].to_i == 2 && (params['data']['HER2_status'].to_i == 1)
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result['subtype'] = 2
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elsif params['data']['ER_status'].to_i == 2 && params['data']['PR_status'].to_i == 2 && (params['data']['HER2_status'].to_i != 1)
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result['subtype'] = 3
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end
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if params['data']['grade'].to_i == 2 || params['data']['grade'].to_i == 4
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result['grade_2'] = 1
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else
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result['grade_2'] = 0
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end
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if params['data']['grade'].to_i == 3
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result['grade_3'] = 1
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else
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result['grade_3'] = 0
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end
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if result['subtype'].to_i == 2
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result['subtype_HER2'] = 1
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else
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result['subtype_HER2'] = 0
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end
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if result['subtype'].to_i == 3
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result['subtype_triple'] = 1
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else
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result['subtype_triple'] = 0
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end
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if result['pstage'].to_i == 2
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result['pstage_2'] = 1
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else
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result['pstage_2'] = 0
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end
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if result['pstage'].to_i == 3
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result['pstage_3'] = 1
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else
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result['pstage_3'] = 0
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end
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if result['pstage'].to_i == 4
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result['pstage_4'] = 1
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else
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result['pstage_4'] = 0
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end
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if params['data']['lvi'].to_i == 1
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result['lvi_yes'] = 1
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else
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result['lvi_yes'] = 0
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end
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result['lpv'] = ((result['age1']-0.7276655)*(-10.87)+(result['age2']+0.4540707)*8.968+(result['size1']-0.643632)*0.7678+(result['nposit']-1.346932)*0.5339+
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result['grade_2']*0.4795+result['grade_3']*0.818+result['subtype_HER2']*0.1806+result['subtype_triple']*0.6457+result['pstage_2']*0.5311+
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result['pstage_3']*1.134+result['pstage_4']*2.172+result['lvi_yes']*0.3321-0.04 rescue 'error')
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@years = ['1','3','5']
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result['table'] = '<input id="current_year" type="hidden" value="'+@years[-1]+'" index="0"/><p id="cancer_table_texts">此分析微針對已接受手術後病人，下表為此病人分別在第1年、3及5年下，根據選定的術後治療所估計的存活率</p>'
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result['table'] += '<a>第</a>'
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result['years'] = @years
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@years.each{|year| result['table'] += ('<button class="cancer_years cancer_table_btn btn btn-default btn-sm">'+year+'</button>')}
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result['table'] += '<a>年</a>'
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@table_head = (locale == "zh_tw") ? ['治療','額外治療效益','總生存率(%)'] :['Treatment','Additional Benefit','Overall Survival(%)']
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@head_name = ['Treatment','Additional_Benefit','Overall_Survival']
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@therapy_choices = (locale == "zh_tw") ? ['純手術'] :['Surgery only']
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@form_to_show.form_show_in_result.values.each{|choice| @therapy_choices.push choice["name"][locale]}
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@therapy_names = ['Surgery_only']
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@form_to_show.form_show_in_result.values.each{|choice| @therapy_names.push choice["variable"]}
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result['treatmeny_method'] = @therapy_names
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result['table'] += '<table><thead><tr>'
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@table_head.each_with_index{|head,index| result['table'] += ('<th class="cancer_th '+@head_name[index]+'">' + head + '</th>')}
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result['table'] += '</tr></thead><tbody>'
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@therapy_choices.each_with_index do |choice,i|
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result['table'] += '<tr class="'+@therapy_names[i].to_s+'">'
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@table_head.each_with_index do |head,index|
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result['table'] += ('<td class="cancer_td '+ @head_name[index]+'">' + ((index == 0) ? (((i==0)? '' : '+') + choice) : '-') + '</td>')
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end
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result['table'] += '</tr>'
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end
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result['texts'] = '<a>此研究分析來自已接受根除性手術後之婦女所得之結果，根據您所輸入的資訊以及治療方式，</a>'+'<div style="clear:both;"></div>'+'<a>在術後第</a>'
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@years.each{|year| result['texts'] += ('<button class="cancer_years cancer_table_btn btn btn-default btn-sm">'+year+'</button>')}
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result['texts'] += '<a>年</a>，'
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@lpv_calc = [-0.001476145,-0.01261639,-0.02519608]
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@servive_ratio = ((Math.exp(@lpv_calc[-1])**(Math.exp(result['lpv'])))*100).round
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result['texts'] += ('<p class="show"><a>100 位只接受根除性手術的婦女中，有 '+ '<a class="'+@therapy_names[0]+' Overall_Survival">'+@servive_ratio.round.to_s+'</a>'+'<a> 位婦女，術後 </a>'+'<a class="surgery_year">'+@years[-1].to_s+'</a>'+'<a>年仍為存活</a></p>')
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result['texts'] += '<a class="addition">'+'，此外</a><div class="extra-text" style="display:none;"><div class="texts_show" style="clear:both;"></div>'
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result['texts'] += '</div>'
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result['servive_ratio'] = @servive_ratio
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end
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result = result.merge(params)
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render :json=> result
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# rescue
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# render :json=> params
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#end
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end
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def index
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uid = OrbitHelper.params[:uid] rescue ""
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tags = OrbitHelper.widget_tags
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categories = OrbitHelper.widget_categories || []
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create_first_field
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@table_str = '<div id="cancer_table"><div id="show_help_modal" class="modal fade"></div>'
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@table_str += '<div id="cancer_table_top"><div id="text_descibe">'+@form_to_show.text_descibe[I18n.locale.to_s] +'</div>'
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@size = {'small'=>@form_to_show.small,'medium'=>@form_to_show.medium,'large'=>@form_to_show.large}
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@table_str += '<div id="font_size_choices">'+'<label id="font_texts">'+t('cancerpredict.font_size')+':</label>'
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@size.each{|size_key,size_value| @table_str += ('<button class="cancer_table_btn btn btn-default btn-sm" onclick="document.getElementById(\'cancer_table\').style[\'font-size\']=\''+size_value+'\';document.getElementById(\'cancer_predict_result_block\').style[\'font-size\']=\''+size_value+'\';">'+t('cancerpredict.'+size_key)+'</button>' )}
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@table_str += '</div></div><div style="clear:both;"></div>'
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@table_str_left = '<div id="cancer_table_left">'
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@table_str_right = '<div id="cancer_table_right">'
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@form_to_show.form_show.each do |num,property|
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@field_property = {}
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property.each do |key,value|
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@value= value
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if @value.class == BSON::Document || @value.class == Hash
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@disp_value = @value[I18n.locale.to_s] rescue ""
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else
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@disp_value = @value
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end
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@field_property[key] = @disp_value
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end
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if @field_property['right'] == 0
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@table_str_left += '<div data-key='+num.to_s+'>'
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break if @field_property["name"] == ""
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@table_str_left += '<label for="'+@field_property["variable"]+'" style="float:left;'+(@field_property["comment_text"] == "" ? "margin-right: 2.125em;" : "")+'" class="cencer_table_name">'
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@table_str_left += @field_property["name"]
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@table_str_left += '</label>'
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if @field_property["comment_text"] != ""
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@table_str_left += '<button tabindex="0" class="cancer_help_btn" data-target="#show_help_modal" style="float:left;cursor: pointer;padding: 0em 0.475em;font-size: 1.25em;border-radius: 15px;background-color: rgb(210, 106, 2);border-color: rgb(210, 106, 2);color: white;"></button>'
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@table_str_left += '<input class="help_texts" type="hidden" value="'+@field_property["comment_text"]+'" name='+@field_property["variable"]+'/>'
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else
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@table_str_left += '<div style="margin-right: 2.125em;"></div>'
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end
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if @field_property["is_num"] == 1
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if @field_property["is_float"] == 1
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@table_str_left += '<input class="num_only float_num cancer_form_field" id="'+@field_property["variable"]+'" style="float:left;clear:right;" data-range="'+@field_property["range"].to_s+'"/>'
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else
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@table_str_left += '<form class="for_num">'
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@table_str_left += '<input class="num_only cancer_form_field" id="'+@field_property["variable"]+'" style="float:left;clear:right;" data-range="'+@field_property["range"].to_s+'" onkeyup="value=value.replace(/[^\d]/g,\'\') "onbeforepaste="clipboardData.setData(\'text\',clipboardData.getData(\'text\').replace(/[^\d]/g,\'\'))"/>'
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@please_choice = (I18n.locale.to_s == "zh_tw") ? "請選擇" : "Please choice"
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@table_str_left += '<select class="select_num"><option value="">'+@please_choice+'</option>'
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for @num in @field_property["range"][0] .. @field_property["range"][1]
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@table_str_left += ('<option value="' + @num.to_s + '">' + @num.to_s + '</option>')
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end
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@table_str_left += '</select></form>'
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end
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else
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@table_str_left += '<div class= "cancer-btn-group cancer_form_field" id="'+@field_property["variable"]+'" style="float:left;clear:right;">'
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@field_property["choice_fields"].each do |create_choice|
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@table_str_left += '<button class="cancer_table_btn btn btn-default btn-sm">'+create_choice+'</button>'
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@table_str_left += '<input type="hidden" value="0" name="'+create_choice+'"/>'
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end
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@table_str_left += '</div>'
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end
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if @field_property["hint"].to_s != ""
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@table_str_left +='<div style="color: rgb(104, 104, 104);font-size:0.75em;clear:both;">'+@field_property["hint"]+'</div>'
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end
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@table_str_left += '</div><div style="clear:both;"></div>'
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else
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@table_str_right += '<div data-key='+num.to_s+'>'
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break if @field_property["name"] == ""
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@table_str_right += '<label for="'+@field_property["variable"]+'" style="float:left;'+(@field_property["comment_text"] == "" ? "margin-right: 2.125em;" : "")+'" class="cencer_table_name">'
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@table_str_right += @field_property["name"]
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@table_str_right += '</label>'
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if @field_property["comment_text"] != ""
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@table_str_right += '<button tabindex="0" class="cancer_help_btn" data-target="#show_help_modal" style="float:left;cursor: pointer;padding: 0em 0.475em;font-size: 1.25em;border-radius: 15px;background-color: rgb(210, 106, 2);border-color: rgb(210, 106, 2);color: white;"></button>'
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@table_str_right += '<input class="help_texts" type="hidden" value="'+@field_property["comment_text"]+'" name='+@field_property["variable"]+'/>'
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else
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@table_str_right += '<div style="margin-right: 2.125em;"></div>'
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end
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if @field_property["is_num"] == 1
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if @field_property["is_float"] == 1
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@table_str_right += '<input class="num_only float_num cancer_form_field" id="'+@field_property["variable"]+'" style="float:left;clear:right;" data-range="'+@field_property["range"].to_s+'"/><button class="btn-sub"></button><button class="btn-add"></button>'
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else
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@table_str_right += '<form class="for_num">'
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@table_str_right += '<input class="num_only cancer_form_field" id="'+@field_property["variable"]+'" style="float:left;clear:right;" data-range="'+@field_property["range"].to_s+'" onkeyup="value=value.replace(/[^\d]/g,\'\') "onbeforepaste="clipboardData.setData(\'text\',clipboardData.getData(\'text\').replace(/[^\d]/g,\'\'))"/>'
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@please_choice = (I18n.locale.to_s == "zh_tw") ? "請選擇" : "Please choice"
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@table_str_right += '<select class="select_num"><option value="">'+@please_choice+'</option>'
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for @num in @field_property["range"][0] .. @field_property["range"][1]
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@table_str_right += ('<option value="' + @num.to_s + '">' + @num.to_s + '</option>')
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end
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@table_str_right += '</select></form>'
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end
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else
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@table_str_right += '<div class= "cancer-btn-group cancer_form_field" id="'+@field_property["variable"]+'" style="float:left;clear:right;">'
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@field_property["choice_fields"].each do |create_choice|
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@table_str_right += '<button class="cancer_table_btn btn btn-default btn-sm">'+create_choice+'</button>'
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@table_str_right += '<input type="hidden" value="0" name="'+create_choice+'"/>'
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end
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@table_str_right += '</div>'
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end
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if @field_property["hint"].to_s != ""
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@table_str_right +='<div class="hint-texts">'+@field_property["hint"]+'</div>'
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end
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@table_str_right += '</div><div style="clear:both;"></div>'
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end
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end
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@table_str_left += '</div>'
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@table_str_right += '</div>'
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@table_str += (@table_str_left+@table_str_right)
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@table_str +='<div style="clear:both;"></div>'
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@table_result_str = '<div id="cancer_predict_result" style="'+((@form_to_show.form_result_is_right == 0) ? 'float:right;' : '')+'"><span class="result_title">'+t("cancerpredict.table.result").to_s+'</span><div style="clear:both;"></div>'
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@tab_name = ['table','text']
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@table_result_str += '<div id="result_contents"><div class="result_tab_group">'
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@tab_name.each_with_index{|name,index| @table_result_str += ('<div id="result_'+name+'_tab" class="result_tab'+((index != 0) ? "" : " active")+'"><a>'+t("cancerpredict.table."+name).to_s+'</a></div><div style="clear:both;"></div>')}
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@table_result_str += '</div><div class="result_content_group">'
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@tab_name.each{|name| @table_result_str += '<div id="result_'+name+'_content" class="result_content"><a>'+'no content'+'</a></div>'}
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@table_result_str += '</div></div></div>'
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@table_button = '<div id="cancer_table_button_group">'
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@submit_btn_str='<button id="cancer_table_submit"><a class="white_text" href="#cancer_predict_result_block">'+t('cancerpredict.table.Submit').to_s+'</a></button>'
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@reset_btn_str='<button id="cancer_table_reset">'+t('cancerpredict.table.Reset').to_s+'</button>'
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@table_button += (@submit_btn_str+@reset_btn_str+'<div style="clear:both;"></div></div></div>')
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@table_result_choice_fileds = '<div id="cancer_table_right_result">' if @form_to_show.form_result_is_right == 1
|
||
@table_result_choice_fileds = '<div id="cancer_table_left_result">' if @form_to_show.form_result_is_right == 0
|
||
@table_result_choice_fileds += '<span class="result_title">'+t('cancerpredict.table.Therapy_choice').to_s+'</span><div style="clear:both;"></div>'
|
||
@table_result_choice_fileds += '<div id="choice_fields">'
|
||
@form_to_show.form_show_in_result.each do |num,property|
|
||
@field_property = {}
|
||
property.each do |key,value|
|
||
@value= value
|
||
if @value.class == BSON::Document || @value.class == Hash
|
||
@disp_value = @value[I18n.locale.to_s] rescue ""
|
||
else
|
||
@disp_value = @value
|
||
end
|
||
@field_property[key] = @disp_value
|
||
end
|
||
@table_result_choice_fileds += '<div data-key='+num.to_s+'>'
|
||
break if @field_property["name"] == ""
|
||
@table_result_choice_fileds += '<label for="'+@field_property["variable"]+'" style="float:left;'+(@field_property["comment_text"] == "" ? "margin-right: 2.125em;" : "")+'" class="cencer_table_name">'
|
||
@table_result_choice_fileds += @field_property["name"]
|
||
@table_result_choice_fileds += '</label>'
|
||
if @field_property["comment_text"] != ""
|
||
@table_result_choice_fileds += '<button tabindex="0" class="cancer_help_btn" data-target="#show_help_modal" style="float:left;cursor: pointer;padding: 0em 0.475em;font-size: 1.25em;border-radius: 15px;background-color: rgb(210, 106, 2);border-color: rgb(210, 106, 2);color: white;"></button>'
|
||
@table_result_choice_fileds += '<input class="help_texts" type="hidden" value="'+@field_property["comment_text"]+'" name='+@field_property["variable"]+'></input>'
|
||
else
|
||
@table_result_choice_fileds += '<div style="margin-right: 2.125em;"></div>'
|
||
end
|
||
if @field_property["is_num"] == 1
|
||
if @field_property["is_float"] == 1
|
||
@table_result_choice_fileds += '<input class="num_only float_num cancer_form_field" id="'+@field_property["variable"]+'" style="float:left;clear:right;" data-range="'+@field_property["range"].to_s+'"/><button class="btn-sub"></button><button class="btn-add"></button>'
|
||
else
|
||
@table_result_choice_fileds += '<form class="for_num">'
|
||
@table_result_choice_fileds += '<input class="num_only cancer_form_field" id="'+@field_property["variable"]+'" style="float:left;clear:right;" data-range="'+@field_property["range"].to_s+'" onkeyup="value=value.replace(/[^\d]/g,\'\') "onbeforepaste="clipboardData.setData(\'text\',clipboardData.getData(\'text\').replace(/[^\d]/g,\'\'))"/><button class="btn-sub"></button><button class="btn-add"></button>'
|
||
@please_choice = (I18n.locale.to_s == "zh_tw") ? "請選擇" : "Please choice"
|
||
@table_result_choice_fileds += '<select class="select_num"><option value="">'+@please_choice+'</option>'
|
||
for @num in @field_property["range"][0] .. @field_property["range"][1]
|
||
@table_result_choice_fileds += ('<option value="' + @num.to_s + '">' + @num.to_s + '</option>')
|
||
end
|
||
@table_result_choice_fileds += '</select></form>'
|
||
end
|
||
else
|
||
@table_result_choice_fileds += '<div class= "cancer-btn-group cancer_form_field" id="'+@field_property["variable"]+'" style="float:left;clear:right;">'
|
||
@field_property["choice_fields"].each do |create_choice|
|
||
@table_result_choice_fileds += '<button class="cancer_table_btn btn btn-default btn-sm">'+create_choice+'</button>'
|
||
@table_result_choice_fileds += '<input type="hidden" value="0" name="'+create_choice+'"></input>'
|
||
end
|
||
@table_result_choice_fileds += '</div>'
|
||
end
|
||
if @field_property["hint"].to_s != ""
|
||
@table_result_choice_fileds +='<div class="hint-texts">'+@field_property["hint"]+'</div>'
|
||
end
|
||
@table_result_choice_fileds += '</div><div style="clear:both;"></div>'
|
||
end
|
||
@table_result_choice_fileds += '</div></div>'
|
||
@table_str += (@table_button+'<div id="cancer_predict_result_block">'+@table_result_str+@table_result_choice_fileds+'</div>'+'<div style="clear:both;"></div>')
|
||
{
|
||
"cancerpredict" => [],
|
||
"extras"=>{"table"=> @table_str}
|
||
}
|
||
end
|
||
def widget
|
||
uid = OrbitHelper.params[:uid] rescue ""
|
||
tags = OrbitHelper.widget_tags
|
||
categories = OrbitHelper.widget_categories || []
|
||
end
|
||
def create_first_field
|
||
if Cancerpredictfields.where("title"=>(@app_title + "_back")).take_while{true}.count == 0
|
||
@form_to_show = Cancerpredictfields.new()
|
||
@form_to_show.title = @app_title +"_back"
|
||
@form_to_show.save
|
||
end
|
||
@form_to_show
|
||
if Cancerpredictfields.where("title"=>@app_title).take_while{true}.count == 0
|
||
@form_to_show = Cancerpredictfields.new()
|
||
@form_to_show.title=@app_title
|
||
@form_to_show.save
|
||
@form_to_show = Cancerpredictfields.where("title"=>@app_title).first
|
||
else
|
||
@form_to_show = Cancerpredictfields.where("title"=>@app_title).first
|
||
end
|
||
end
|
||
end |